integrativemodeling/npc2018

Modeling of the yeast Nuclear Pore Complex

Language: Python - Size: 1.25 GB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0

integrativemodeling/npctransport

Language: Python - Size: 1.85 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

integrativemodeling/nup133

Modeling of the Nup133 subunit of the Nuclear Pore Complex

Language: Python - Size: 330 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

integrativemodeling/pom152

Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex

Language: Python - Size: 562 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

integrativemodeling/Complement

Human complement modeling

Language: Python - Size: 55.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

integrativemodeling/nup84

Modeling of the Nup84 subcomplex of the Nuclear Pore Complex

Language: Python - Size: 666 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 1

integrativemodeling/PM_NPC_Assembly

Code for spatiotemporal modeling of the NPC Assembly Pathway

Language: Python - Size: 112 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

integrativemodeling/nbspike

Integrative modeling of nanobody binding modes to the SARS-CoV-2 Spike protein

Language: PureBasic - Size: 32.2 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 1

integrativemodeling/smc56_nse256

Integrative modeling of the Smc5/6-Nse2/5/6 complex using comparative modeling and chemical crosslinks.

Language: HTML - Size: 15.9 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

integrativemodeling/gtuscSpc110

Integrative model of the γTuSC-Spc110 complex

Language: Python - Size: 3.85 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

integrativemodeling/Nef_CD4_AP2

Integrative structure of the Nef-CD4(CD)-AP2(Δμ2-CTD) complex

Language: Python - Size: 16 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 1

integrativemodeling/CSN2019

Structural dynamics of the human COP9 signalosome revealed by cross-linking mass spectrometry and integrative modeling

Language: Python - Size: 117 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 1

integrativemodeling/pol_ii_g

Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1

Language: Python - Size: 21.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 2

integrativemodeling/exocyst

Integrative Modeling of Yeast Exocyst Complex

Language: Python - Size: 228 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

integrativemodeling/exosome

Modeling exosome complexes from cross-link MS data

Language: Python - Size: 1.18 GB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 1

integrativemodeling/nup82

Modeling of the Nup82 subcomplex of the Nuclear Pore Complex

Language: Python - Size: 206 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

integrativemodeling/mediator

Modeling of the yeast Mediator complex

Language: Python - Size: 338 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

integrativemodeling/ecm29

Regulation of 26S proteasome via interaction with Ecm29

Language: Python - Size: 10.8 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

integrativemodeling/GLP1R-Gs

Language: Python - Size: 4.51 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 1

integrativemodeling/NPC_Basket

Language: Python - Size: 81.6 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

integrativemodeling/U2OS_cellmap_structures

Language: Python - Size: 327 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

integrativemodeling/NPC_TMDs

Language: Python - Size: 34.3 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

integrativemodeling/tfiih

Modeling of the TFIIH complex using chemical cross-links and electron microscopy (EM) density maps

Language: Python - Size: 148 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

integrativemodeling/phoq

Multi-state modeling of the PhoQ two-component system

Language: Python - Size: 28.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

integrativemodeling/pde6

Modeling of the phosphodiesterase (PDE6)

Language: Python - Size: 18.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

integrativemodeling/IMP_BioSystem_Domain_Fly_Genome Fork of 3DGenomes/IMP_BioSystem_Domain_Fly_Genome

Example of using IMP to model a region of the Fly genome https://integrativemodeling.org/systems/

Language: Python - Size: 693 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

integrativemodeling/ORF2p

Language: Jupyter Notebook - Size: 419 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

integrativemodeling/sTREM2-fAbeta_modeling

Language: Python - Size: 8.74 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

integrativemodeling/spb

Modeling of the yeast spindle pole body (SPB)

Language: Python - Size: 85.7 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

integrativemodeling/SEC_TAR

Language: Shell - Size: 417 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

integrativemodeling/sea

Modeling of the SEA complex

Language: HTML - Size: 27.8 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

integrativemodeling/sampcon

Benchmark for sampling exhaustiveness method

Language: Python - Size: 500 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

integrativemodeling/rvbs

Size: 0 Bytes - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

integrativemodeling/Pks13

Language: Python - Size: 25.6 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

integrativemodeling/p85

Assembly and Molecular Architecture of the p85α homodimer

Size: 125 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

integrativemodeling/npc_slide_and_exchange

Language: Tcl - Size: 73.8 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

integrativemodeling/npc_passive_permeability_2016

Language: Python - Size: 9.53 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

integrativemodeling/npc_fg_2018

Brownian Dynamics simulations of yeast NPC FG repeats

Language: Python - Size: 86.9 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

integrativemodeling/NPC_3.0

Integrative structure determination of the yeast NPC

Language: Python - Size: 82.1 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

integrativemodeling/npcassembly

Size: 0 Bytes - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

integrativemodeling/multifoxs_benchmark

Benchmark of the MultiFoXS method

Size: 1000 Bytes - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

integrativemodeling/integrin

Example of using IMP and PMI to model integrin

Language: Python - Size: 554 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1

integrativemodeling/glycophorin

Example of using IMP and PMI to model glycophorin

Language: Python - Size: 522 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1

integrativemodeling/gamma-tusc

Modeling the Structure of the Gamma-Tubulin Small Complex

Language: Python - Size: 4.22 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

integrativemodeling/allosmod_benchmark

Benchmark of the AllosMod method

Language: Python - Size: 703 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

integrativemodeling/26S-PIPs

Modeling the structures of complexes between the 26S proteasome and proteasome interacting proteins

Language: Python - Size: 3.76 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

integrativemodeling/saxsmerge_benchmark

Benchmark of the SAXS Merge method

Language: Python - Size: 6.09 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 1

integrativemodeling/A3G-CRL5-Vif-CBFb

Integrative structure determination of the A3G-CRL5-Vif-CBFβ complex

Language: Python - Size: 85.3 MB - Last synced at: 2 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

integrativemodeling/pemap

Integrative Structure Determination using data from point mutant epistatic miniarray profile

Language: Python - Size: 19.5 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

integrativemodeling/eif3

Data and scripts to model eIF3 from mass spec data

Language: Python - Size: 5.33 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

integrativemodeling/hybrid_ms_method

Method for integrating MS data from the Robinson lab.

Language: Fortran - Size: 66.4 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 3

integrativemodeling/40s-eif1-eif3

Determination of the molecular architecture of the 40S•eIF1•eIF3 translation initiation complex

Language: Python - Size: 143 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

integrativemodeling/multifit_groel

Modeling of the bacterial molecular chaperone GroEL using 3D EM data and cnmultifit

Language: Parrot - Size: 42.5 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

integrativemodeling/ms_benchmark

Benchmark for the sampling procedure used in the Mass Spec paper

Language: Python - Size: 50.8 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1

integrativemodeling/fret_benchmark

Benchmark of the FRETR Bayesian restraint

Language: Python - Size: 41.6 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1