jperkel/nih_reporter

Code to query the NIH RePORTER database

Language: Jupyter Notebook - Size: 926 KB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 0 - Forks: 1

jperkel/surveyR

Language: R - Size: 46.9 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

jperkel/cmdparseR6

WIP: a command-line parser using R6 objects

Language: R - Size: 11.7 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

jperkel/jperkel.github.io

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jperkel/mymanuscript

Demo manuscript using Manubot

Language: HTML - Size: 3.99 MB - Last synced at: 3 months ago - Pushed at: over 5 years ago - Stars: 10 - Forks: 5

jperkel/cvd-graphic

Language: R - Size: 466 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 9 - Forks: 4

jperkel/conda-env-tests

Scripts and environment files to test computational environments with conda.

Language: Shell - Size: 21.5 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1

jperkel/gb_read

An example GenBank file reader in Rust

Language: Rust - Size: 85 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 34 - Forks: 7

jperkel/nature_bash

Example scripts demonstrating science at the command line.

Language: Shell - Size: 69.3 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 72 - Forks: 16

jperkel/computed_manuscript

A model executable manuscript

Language: HTML - Size: 6.18 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 44 - Forks: 10

jperkel/example_notebook

A sample Jupyter notebook with Binder & Colab integration

Language: Jupyter Notebook - Size: 161 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 29 - Forks: 15

jperkel/awesome-single-cell Fork of seandavi/awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

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jperkel/todo_list

Language: R - Size: 163 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

jperkel/invoicing

A Bash invoice-tracking system for freelancers.

Language: Shell - Size: 90.8 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

jperkel/computed_quarto_manuscript

Language: JavaScript - Size: 852 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 1

jperkel/cmdparseR

Simple command-line parser for R

Language: R - Size: 89.8 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 0

jperkel/parse_command_line

A simple command line parser for R

Language: R - Size: 56.6 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 0

jperkel/tidytuesday

Language: R - Size: 2.78 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

jperkel/nature_code_survey

Language: Shell - Size: 276 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 1

jperkel/covidlit

Growth of the COVID19 literature

Language: R - Size: 2.57 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 10 - Forks: 2

jperkel/MappingToolsBinder

A simple R Markdown notebook that can be executed in RStudio using Binder

Language: R - Size: 25.4 KB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 1

jperkel/Mapping_tools_holepunch

Language: Shell - Size: 47.9 KB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 4 - Forks: 0

jperkel/rust_in_nature

Language: Rust - Size: 55.7 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

jperkel/sciwridiversity2020

Session notes from SciWri20 #SciWriDiversity breakout session, "Representation Matters: Better Writing Through Diversity"

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jperkel/Julia_on_Nextjournal

GitHub backup of a Julia notebook created on Nextjournal

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jperkel/Science-on-GitHub

Resources to accompany Nature Toolbox article on Science on GitHub

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jperkel/iscb-diversity-manuscript Fork of greenelab/iscb-diversity-manuscript

Analysis of ISCB Fellows and Keynotes Reveals Disparities

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jperkel/deep-review Fork of greenelab/deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

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jperkel/try-manubot Fork of manubot/try-manubot

A repository to practice contributing to a Manubot manuscript

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jperkel/rootstock Fork of manubot/rootstock

Clone me to create your Manubot manuscript

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jperkel/Snakemake_example

A Snakemake 'Hello world!' workflow

Size: 8.79 KB - Last synced at: over 2 years ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 1

jperkel/holepunch_test

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jperkel/r-novice-inflammation Fork of swcarpentry/r-novice-inflammation

Repo creates a website for the Software Carpentry introduction to R for novices using inflammation data:

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jperkel/Mapping-tools-examples

Mapping in R

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jperkel/spreadsheet-ecology-lesson Fork of datacarpentry/spreadsheet-ecology-lesson

This repository contains Data Carpentry lessons on using spreadsheets for data wrangling.

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jperkel/todo.txt-touch-ios Fork of todotxt/todo.txt-ios

An iOS app for managing your todo.txt file stored in Dropbox.

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jperkel/mypybioinfotools

Language: Python - Size: 16.6 KB - Last synced at: over 2 years ago - Pushed at: almost 9 years ago - Stars: 0 - Forks: 0