kaitj/kaitj.github.io

jasonkai.com

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kaitj/NHP-BrainExtraction Fork of HumanBrainED/NHP-BrainExtraction

Size: 568 MB - Last synced: 5 days ago - Pushed: 6 days ago - Stars: 0 - Forks: 0

kaitj/niftyone Fork of childmindresearch/niftyone

Large-scale neuroimaging visualization using FiftyOne

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kaitj/nopype Fork of childmindresearch/nopype

Language: Python - Size: 1.03 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 0 - Forks: 0

kaitj/yawp

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kaitj/template-python-repository Fork of childmindresearch/template-python-repository

A template repository for Python projects

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kaitj/nmind-standards-checklist Fork of nmind/standards-checklist

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kaitj/nmind.github.io Fork of nmind/nmind.github.io

NMIND website

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kaitj/nmind-proceedings Fork of nmind/proceedings

This is the repo for the search/details views of NMIND's `/proceedings` path.

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kaitj/gen192 Fork of childmindresearch/gen192

192 C-PAC pipeline generator

Language: Python - Size: 249 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 1

kaitj/snakedwi Fork of akhanf/snakedwi

Language: Perl - Size: 49.2 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

kaitj/hippunfold Fork of khanlab/hippunfold

BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

Language: Python - Size: 292 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

kaitj/afids-CNN Fork of afids/afids-CNN

Automatic localization and identification of salient brain landmarks

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kaitj/snakebids Fork of khanlab/snakebids

Snakemake + BIDS

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kaitj/labelmerge Fork of khanlab/labelmerge

Merge label maps

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kaitj/adventofcode

Storing solutions to advent of code 2020-2023

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kaitj/hippunfold_deps Fork of khanlab/hippunfold_deps

Dependencies container for hippocampal_autotop (niftynet, minified fsl/ants, c3d, mcr)

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kaitj/rustlings Fork of rust-lang/rustlings

:crab: Small exercises to get you used to reading and writing Rust code!

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kaitj/autobids-globus Fork of khanlab/autobids-globus

Automatically manage globus distribution of Autobids datasets

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kaitj/autobids-newstudy-app Fork of khanlab/autobids-newstudy-app

Language: Python - Size: 11.4 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

kaitj/actions Fork of khanlab/actions

Centralized repo of reusable GH actions

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kaitj/OpenBBTerminal Fork of OpenBB-finance/OpenBBTerminal

Investment Research for Everyone, Anywhere.

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kaitj/zonaconn-smk Fork of akhanf/diffparc-smk

Snakemake workflow for ZI subcortical parcellation

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kaitj/vasst-dev Fork of akhanf/vasst-dev 📦

Dev tools for vasst pipeline

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kaitj/test-ghaction-space

Repo to test github action for clearing up space

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kaitj/tbj-statsapp 📦

Blue Jays developer exercise - Team and Player Stats Application

Language: Python - Size: 269 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

kaitj/surface_texture 📦

Surface-based texture analysis

Language: Python - Size: 14.9 MB - Last synced: 10 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

kaitj/snakemake_hippo_gif 📦

Portion of snakemake workflow for creating a gif for hippocampal visualization

Language: Python - Size: 1000 Bytes - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

kaitj/snakemake-bet-test 📦

Repository with some test code for skull stripping and visualizing nifti images with Snakemake

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kaitj/example-snakemake Fork of tkkuehn/example-snakemake

Example snakemake workflow(s) for methods lunch

Language: Python - Size: 7.81 KB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

kaitj/scwg2018_python_neuroimaging Fork of jerdra/SDC-BIDS-fMRI_old 📦

Scientific-Compute Working Group Workshop on performing analysis of neuroimaging data in python

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kaitj/remote-cc-tools Fork of akhanf/remote-cc-tools

some tools for accessing compute canada resources remotely

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kaitj/regvizQC 📦

Quick visual check of registration

Language: Python - Size: 11.7 KB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

kaitj/prepdwi Fork of khanlab/prepdwi 📦

BIDS-app for pre-processing DWI (denoise, unring, top-up, eddy, bedpost.. )

Language: MATLAB - Size: 85.8 MB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

kaitj/nipype Fork of nipy/nipype 📦

Workflows and interfaces for neuroimaging packages

Language: Python - Size: 71.4 MB - Last synced: 10 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

kaitj/neurobeer 📦

NeuroBundle Extraction and Evaluation Resource

Language: Python - Size: 1.59 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 3

kaitj/mrtpipelines 📦

Repository to store MRTrix3 tractography pipelines created with Nipype

Language: Python - Size: 791 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1

kaitj/cc-project-template

Cookiecutter Python3 project template

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kaitj/logos

Repo to store logos for acknowledgements/affiliations

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kaitj/gif_your_nifti Fork of miykael/gif_your_nifti 📦

How to create fancy GIFs from an MRI brain image

Language: Python - Size: 105 MB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

kaitj/dataprobe3d 📦

Slicer project week Western - data probe for the 3D viewer

Language: Python - Size: 47.9 KB - Last synced: 10 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 1

kaitj/datalad-osf Fork of templateflow/datalad-osf 📦

Utility scripts to facilitate use of Datalad with OSF

Language: Python - Size: 200 KB - Last synced: 10 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 1

kaitj/Cerebro_Viewer Fork of sina-mansour/Cerebro_Viewer

A pythonic 3D viewer to visualize and plot brains and neuroimaging data

Language: Python - Size: 11.5 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

kaitj/BrainhackWestern Fork of akhanf/BrainhackWestern.github.io 📦

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kaitj/TOPSY 📦

Code base for studying short-ranged tractography in psychosis

Language: Jupyter Notebook - Size: 858 KB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

kaitj/scattr-ohbm 📦

Analysis of SCATTR workflow for OHBM 2023

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kaitj/autoafids_prep Fork of afids/autoafids_prep

snakemake workflow to prep data for autoafids project

Size: 122 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

kaitj/afids-utils Fork of afids/afids-utils

Utility functions for working with AFIDs data / workflows

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kaitj/scattr Fork of khanlab/scattr

Snakebids workflow for mapping the subcortical connectome

Language: Python - Size: 42.8 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

kaitj/khanlab.github.io Fork of khanlab/khanlab.github.io

Khan Lab website

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kaitj/SDC-BIDS-dMRI Fork of carpentries-incubator/SDC-BIDS-dMRI

Introduction to dMRI

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kaitj/juBIDS 📦

pyBIDS, but in Julia (for learning purposes)

Language: Julia - Size: 2.93 KB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

kaitj/mriqc Fork of nipreps/mriqc 📦

Automated Quality Control and visual reports for Quality Assesment of structural (T1w, T2w) and functional MRI of the brain

Language: Python - Size: 81.8 MB - Last synced: 17 days ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

kaitj/hcp_subcortical_repro 📦

Jupyter notebooks related to subcortical reproducibility

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kaitj/mrtproc

Snakemake / SnakeBIDS workflow for preprocesing using Mrtrix3

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kaitj/kaitj

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kaitj/afids-validator Fork of afids/afids-validator

Validator for the anatomical fiducial placement protocol

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kaitj/gradunwarp Fork of ksubramz/gradunwarp

Gradient Unwarping in Python

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