kalilamali/atlassian_coursera_version_control_with_git

This is the final project for the atlassian coursera version control with git course.

Size: 1.95 KB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

kalilamali/Whole_genome_sequencing_analysis

Whole genome sequencing (WGS) was combined with bioinformatics tools to investigate the epidemiology of Vibrio cholerae in the Philippines and in other cholera affected countries.

Size: 7.37 MB - Last synced: about 1 month ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

kalilamali/skin_detector

Skin tone detector that uses the individual topology angle (ITA).

Language: Jupyter Notebook - Size: 4.5 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 3 - Forks: 1

kalilamali/SKINdx

A local app that runs in your browser based on a deep learning system that can classify an image in 2 ways: Binary classification of skin vs. non-skin. 304 disease categories.

Language: Python - Size: 24.4 KB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

kalilamali/simple-skin-detection Fork of colin-yao/simple-skin-detection

Skin tone estimation and segmentation in MATLAB and OpenCV

Size: 647 KB - Last synced: about 1 month ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

kalilamali/gcp-flask-ml-deploy Fork of noahgift/gcp-flask-ml-deploy

This is a project to auto-deploy with an ML payload

Language: Python - Size: 5.86 KB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

kalilamali/kmodes_cluster_visualization

Get kmodes clusters from an excel sheet with data and visualize them as nested donut plots.

Language: Jupyter Notebook - Size: 2.06 MB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

kalilamali/SARS-CoV-2_Illumina_pipeline

Step-by-step approach in the analysis of SARS-CoV-2 cDNA from raw reads using fastqc, trimmomatic, bwa, vcftools.

Size: 3.91 KB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

kalilamali/ISIC_2019_Machine_learning_for_Dermatology

This work was presented in a poster session as oral examination for DTU's course 02456 Deep learning.

Language: Jupyter Notebook - Size: 7.03 MB - Last synced: about 1 month ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

kalilamali/isic_2019

Skin lesion classifier for the ISIC 2019 challenge using Python and PyTorch.

Language: Python - Size: 59.2 MB - Last synced: about 1 month ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

kalilamali/Dermatology

Machine learning experiments focus on skin lesions

Language: Jupyter Notebook - Size: 2.43 MB - Last synced: about 1 month ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

kalilamali/bioweb_image_getter

This program gets Amphibia images from BIOWEB given a list with species names.

Language: Python - Size: 1.95 KB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

kalilamali/microbeseq_nbdev_augment Fork of ssi-dk/microbeseq_nbdev_augment

Files to assist in setup of nbdev

Size: 38.1 KB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

kalilamali/scaffold

This is a project scaffold for Python

Language: Makefile - Size: 9.77 KB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

kalilamali/Integrons

Integron analysis tools. Scripts necessary to reproduce the validation of IntFinder (version 1.0).

Language: Python - Size: 14.6 KB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

kalilamali/foodex2_code_meaning

An online or local app that takes an EFSA FoodEx2 code and returns its meaning.

Language: Python - Size: 138 KB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

kalilamali/conda_ci_github_actions_demo

This is a demo repo for CI and CD for conda environments using GitHub actions.

Language: Python - Size: 7.81 KB - Last synced: about 1 month ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

kalilamali/ucm_genomes_and_genome_analysis

R code in R Markdown used for ucm genomes and genome analysis course

Language: HTML - Size: 61.6 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

kalilamali/drawio_github_demo

This a demo repo for diagrams in GitHub using draw.io

Language: HTML - Size: 21.5 KB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

kalilamali/bacteria_analyzer

Interactive program for handling data related to growth rates of different bacteria at different temperatures.

Language: Python - Size: 61.5 KB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

kalilamali/approval_tests_python_demo

This is a demo repo for testing in python using ApprovalTests.Python

Language: Makefile - Size: 7.81 KB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

kalilamali/hugoforduke17 Fork of noahgift/hugoforduke17

This is a sample hugo website for a duke Class

Size: 7.81 KB - Last synced: about 1 month ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

kalilamali/dukehugofeb1 Fork of noahgift/dukehugofeb1

this is a Hugo continuous delivery site

Size: 6.84 KB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

kalilamali/codespaces-demo

This is a demo repo for CI and CD using GitHub codespaces and GitHub actions.

Language: Makefile - Size: 7.81 KB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

kalilamali/bifrost_chewbbaca Fork of ssi-dk/bifrost_chewbbaca

Language: Python - Size: 83 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

kalilamali/Flask-Elastic-Beanstalk Fork of noahgift/Flask-Elastic-Beanstalk

Size: 25.4 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

kalilamali/bifrost_enterobase Fork of ssi-dk/bifrost_enterobase

Size: 217 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

kalilamali/github-actions-demo Fork of noahgift/github-actions-demo

This is a repo for building out Github Actions and Tricks

Language: Makefile - Size: 20.5 KB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

kalilamali/duke_coursera_cloud_computing_foundations

This is the first lab for the duke coursera cloud computing foundations.

Language: Jupyter Notebook - Size: 1.95 KB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

kalilamali/bifrost_assemblatron Fork of ssi-dk/bifrost_assemblatron

Bifrost Component: Assemblatron - De-novo assembly of paired reads for QC and downstream Analysis purposes

Size: 91.8 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

kalilamali/Decision-support-in-dermatology

Scripts used in "Deep learning for decision support in dermatology". This work was presented as a M. Sc. Thesis for the Technical University of Denmark (DTU).

Language: Python - Size: 113 KB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

kalilamali/FishDNA_pipeline

Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.

Size: 10.6 MB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

kalilamali/kalilamali

Size: 8.79 KB - Last synced: about 1 month ago - Pushed: 11 months ago - Stars: 0 - Forks: 0