kellylab/viral-protein-function-plm

Viral protein family functional prediction using protein language models

Language: PureBasic - Size: 13.4 MB - Last synced: 12 days ago - Pushed: 13 days ago - Stars: 9 - Forks: 0

kellylab/SARS-CoV-2-surveillence

Scripts and files related to the surveillance of SARS-CoV-2 for three years in the Bronx

Language: Jupyter Notebook - Size: 24.4 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

kellylab/Fireworks

PyTorch with DataFrames

Language: Python - Size: 13.9 MB - Last synced: 12 days ago - Pushed: about 1 year ago - Stars: 14 - Forks: 3

kellylab/microbeFDT-neo4j

microbeFDT-neo4j

Size: 10.9 MB - Last synced: 8 months ago - Pushed: about 5 years ago - Stars: 4 - Forks: 3

kellylab/Metagenomic-Disease-Classification-With-Deep-Learning

This repository accompanies the paper "Multiclass Disease Classification from Microbial Whole-CommunityMetagenomes using Graph Convolutional Neural Networks."

Language: Python - Size: 166 KB - Last synced: 9 months ago - Pushed: almost 5 years ago - Stars: 8 - Forks: 6

kellylab/viral-protein-function-annotation-with-protein-language-model

Accompanying jupyter notebooks and data for figure generation for published manuscript

Language: Jupyter Notebook - Size: 156 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

kellylab/oral-microbes-are-a-signature-of-disease-in-the-gut

Source code accompanying the paper "Oral Microbes are a Signature of Disease in the Gut"

Size: 1.95 KB - Last synced: over 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

kellylab/CuratedMetagenomicData-Python

Python Interface for Accessing CuratedMetagenomicData

Size: 1000 Bytes - Last synced: over 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

kellylab/longitudinal-prediction-of-covid-outcomes

This is the code accompanying the paper "Longitudinally Monitored Biomarkers Predict the Timing of COVID-19 Outcomes"

Language: Jupyter Notebook - Size: 24.1 MB - Last synced: over 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

kellylab/genomic-surveillance-of-the-bronx

Source code repository for the paper "Genomic Surveillance of SARS-CoV-2 in the Bronx Enables Clinical and Epidemiological Inference"

Language: Python - Size: 16.5 MB - Last synced: over 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1

kellylab/artic-docker

Docker Image for Artic Coronavirus Sequencing Pipeline

Language: Dockerfile - Size: 15.6 KB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 1

kellylab/microbial-landscapes

Code and data for 'Inferring the quasipotential landscape of microbial ecosystems with topological data analysis'

Language: R - Size: 106 MB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 3 - Forks: 1

kellylab/PhageGenomeAnnotation

Phage genome annotation pipeline for Nahant Phages

Language: Jupyter Notebook - Size: 1.7 MB - Last synced: over 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

kellylab/nahant-genome-rearrangement

Language: Jupyter Notebook - Size: 154 MB - Last synced: over 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

kellylab/Microbiome_CRCdrug_Turnover

We report quantitative evidence of inter-individual variability in microbiome metabolism of the inactive metabolite of irinotecan to its active form.

Size: 2.16 MB - Last synced: over 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

kellylab/DiversityWorkshop

Language: R - Size: 1.71 MB - Last synced: over 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

kellylab/infograf

R functions

Language: R - Size: 8.79 KB - Last synced: 4 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0