malonge/RagTag

Tools for fast and flexible genome assembly scaffolding and improvement

Language: Python - Size: 278 KB - Last synced: 29 days ago - Pushed: 4 months ago - Stars: 435 - Forks: 43

malonge/RaGOO

RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag

Language: Python - Size: 143 KB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 162 - Forks: 28

malonge/PatchPolish

Language: Python - Size: 17.6 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 3 - Forks: 0

malonge/seqtk Fork of lh3/seqtk

Toolkit for processing sequences in FASTA/Q formats

Language: C - Size: 152 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1

malonge/AlignmentConverters

Convert between common sequence alignment formats

Language: Python - Size: 3.91 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 5 - Forks: 1

malonge/ChromMatch

Assign chromosome names to a genome assembly

Language: Python - Size: 9.77 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 3 - Forks: 2

malonge/DupCheck

Genotype putative DUPs by querying short read coverage

Language: Python - Size: 18.6 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 1

malonge/CallSV

A long-read SV calling pipeline

Language: Shell - Size: 2.93 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 7 - Forks: 1

malonge/T2T-Polish Fork of arangrhie/T2T-Polish

Repository for the T2T CHM13 team-polishing group

Language: C - Size: 478 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

malonge/malonge.github.io Fork of academicpages/academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

Language: JavaScript - Size: 56.7 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

malonge/bioconda-recipes Fork of bioconda/bioconda-recipes

Conda recipes for the bioconda channel.

Language: Shell - Size: 312 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

malonge/SALSA Fork of marbl/SALSA

SALSA: A tool to scaffold long read assemblies with Hi-C data

Language: Python - Size: 357 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

malonge/hmmlearn Fork of hmmlearn/hmmlearn

Hidden Markov Models in Python, with scikit-learn like API

Language: Python - Size: 1.98 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

malonge/old_malonge.github.io

Language: HTML - Size: 11.9 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

malonge/CAMSA Fork of compbiol/CAMSA

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

Size: 6.46 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

malonge/Minipolish Fork of rrwick/Minipolish

A tool for Racon polishing of miniasm assemblies

Language: Python - Size: 315 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

malonge/CallIntrogressions

Language: Python - Size: 10.7 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 2

malonge/NanoGrid Fork of skoren/NanoGrid

Nanopolish wrapper for SGE

Language: Shell - Size: 26.4 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

malonge/Assemblytics_web Fork of MariaNattestad/Assemblytics_web

Full web application code for Assemblytics

Language: JavaScript - Size: 42.7 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

malonge/FALCON Fork of PacificBiosciences/FALCON

FALCON: experimental PacBio diploid assembler

Language: Python - Size: 1.34 MB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 0 - Forks: 1