mikemc/website-1 Fork of nf-core/website

Code and files for the main nf-core website.

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mikemc/speedyseq

Speedy versions of phyloseq functions

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mikemc/R.nvim Fork of R-nvim/R.nvim

Neovim plugin to edit R files

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mikemc/vivo-vitro

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mikemc/neorg-doom

Module for Neorg inspired by Doom Emacs

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mikemc/neorg Fork of nvim-neorg/neorg

Modernity meets insane extensibility. The future of organizing your life in Neovim.

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mikemc/metacal

Metagenomics calibration R package

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mikemc/website-hugo

personal website

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mikemc/vo2pandoc Fork of jschlatow/vo2pandoc

Script that converts vim outliner syntax into pandoc markdown

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mikemc/nvim-config

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mikemc/momspi-data

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mikemc/differential-abundance-theory

A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.

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mikemc/dada2-reference-databases

Code to create 16S taxonomy training files formatted for DADA2

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mikemc/mbsim

R package for simulating microbiome experiments

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mikemc/barCoder Fork of ECBCgit/barCoder

barCoder will generate a list of sequences that can be directly synthesized and inserted into the target genomes via user-specified targeting vectors.

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mikemc/notebook

Personal open research notebook

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mikemc/psplyr

A Grammar of Data Manipultation for Phyloseq Objects

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mikemc/r-inla Fork of hrue/r-inla

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mikemc/recipes Fork of tidymodels/recipes

A preprocessing engine to generate design matrices

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mikemc/qmm

Quantitative Microbiome Measurement

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mikemc/fido Fork of jsilve24/fido

Multinomial Logistic-Normal Models (really fast)

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mikemc/dada2 Fork of benjjneb/dada2

Accurate sample inference from amplicon data with single nucleotide resolution

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mikemc/InSilicoSeq Fork of HadrienG/InSilicoSeq

:rocket: A sequencing simulator

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mikemc/mplyr

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mikemc/mgs-bias-manuscript

Analysis for McLaren, Willis, and Callahan (2019)

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mikemc/phyloseqpp

Phyloseq extensions and functions for tidier analysis of microbiome data

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mikemc/manis-hugo-theme Fork of yursan9/manis-hugo-theme

Sweet little Hugo's theme for personal website

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mikemc/bias-estimation

Notes and code for bias-estimation methods

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mikemc/mc-datasets

Datasets for investigating experimental bias in metagenomics measurements

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mikemc/mc_datasets_backup

Datasets for investigating experimental bias in metagenomics measurements

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mikemc/blog

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mikemc/kiss Fork of ribice/kiss

Stupidly simple Hugo blogging theme

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mikemc/roxygen Fork of r-lib/roxygen2

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mikemc/microbiome-cookbook

R microbiome cookbook

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mikemc/phyloseq Fork of joey711/phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

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mikemc/metaphlanr

Post-process MetaPhlAn2 output in R

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mikemc/test_site

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mikemc/vim_config

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mikemc/valley-crossing-subdivided

Source code for simulations and numerical predictions for the manuscript "Fitness-valley crossing in subdivided asexual populations" (preprint available at http://biorxiv.org/content/early/2016/10/08/079624).

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