GitHub / nipreps 46 Repositories
nipreps/fmripost-resample
Language: Python - Size: 178 KB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 1
nipreps/fmripost-template
A generic fMRIPost workflow
Language: Python - Size: 150 KB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 2
nipreps/fmripost-rapidtide
A BIDS App for running rapidtide on a preprocessed fMRI dataset.
Language: Python - Size: 223 KB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 3 - Forks: 1
nipreps/nifreeze
A flexible framework for volume-wise artifact estimation and correction across multiple neuroimaging modalities (diffusion MRI, functional MRI, and PET)
Language: Python - Size: 8.33 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 2 - Forks: 3
nipreps/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
Language: Python - Size: 217 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 317 - Forks: 134
nipreps/sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
Language: Python - Size: 64.8 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 35 - Forks: 28
nipreps/nireports
The NiPreps' Reporting and Visualization system - report templates and "reportlets"
Language: Python - Size: 93.7 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 10 - Forks: 19
nipreps/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Language: HTML - Size: 57.5 MB - Last synced at: 7 days ago - Pushed at: 9 days ago - Stars: 666 - Forks: 301
nipreps/fmripost-aroma
Run ICA-AROMA on fMRIPrep derivatives
Language: Python - Size: 351 KB - Last synced at: 3 days ago - Pushed at: 11 days ago - Stars: 11 - Forks: 2
nipreps/niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
Language: Python - Size: 297 MB - Last synced at: 7 days ago - Pushed at: about 1 month ago - Stars: 96 - Forks: 53
nipreps/fmriprep_stats
Automatic reports summarizing usage stats from Sentry.io
Language: Jupyter Notebook - Size: 6.09 MB - Last synced at: 3 days ago - Pushed at: 13 days ago - Stars: 4 - Forks: 1
nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
Language: Python - Size: 627 MB - Last synced at: 7 days ago - Pushed at: about 2 months ago - Stars: 140 - Forks: 41
nipreps/.github
Shared community health files
Size: 42 KB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 2 - Forks: 2
nipreps/nibabies
fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI
Language: Python - Size: 6.93 MB - Last synced at: 20 days ago - Pushed at: 23 days ago - Stars: 29 - Forks: 12
nipreps/eddymotion 📦
Open-source eddy-current and head-motion correction for dMRI.
Language: Python - Size: 15.1 MB - Last synced at: 4 days ago - Pushed at: 3 months ago - Stars: 17 - Forks: 16
nipreps/fmripost-phase
An attempt at an fMRIPost workflow for handling phase data
Language: Python - Size: 183 KB - Last synced at: 3 days ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 1
nipreps/synthstrip
Synthstrip integration to be used across nipreps
Language: Python - Size: 48.8 KB - Last synced at: 3 days ago - Pushed at: 8 months ago - Stars: 10 - Forks: 2
nipreps/dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Language: Python - Size: 115 MB - Last synced at: 20 days ago - Pushed at: over 1 year ago - Stars: 67 - Forks: 25
nipreps/GOVERNANCE
The NiPreps Community's Governance Documents
Language: Python - Size: 115 KB - Last synced at: 3 days ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 2
nipreps/acres
Resource-loading utility for Python
Language: Python - Size: 42 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 1
nipreps/202504-sprint Fork of nipreps/202405-sprint
NiPreps sprint, Cambridge, MA, April 30 - May 2, 2025
Language: HTML - Size: 22.5 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
nipreps/nipreps.github.io
The NiPreps landing page
Language: Python - Size: 159 MB - Last synced at: 3 days ago - Pushed at: 3 months ago - Stars: 3 - Forks: 11
nipreps/nirodents
Language: Python - Size: 3.39 MB - Last synced at: 5 days ago - Pushed at: 10 months ago - Stars: 13 - Forks: 3
nipreps/migas-py
A ready-to-go python package for communicating with a migas server
Language: Python - Size: 118 KB - Last synced at: 3 days ago - Pushed at: 6 months ago - Stars: 3 - Forks: 1
nipreps/version-schemes
setuptools_scm plugin for nipreps version schemes
Language: Python - Size: 37.1 KB - Last synced at: 3 days ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0
nipreps/fmriprep-notebooks
A repository for notebooks associated with FMRIPREP
Language: Jupyter Notebook - Size: 9.57 MB - Last synced at: 3 days ago - Pushed at: over 6 years ago - Stars: 17 - Forks: 2
nipreps/mriqc-learn
Learning on MRIQC-generated image quality metrics (IQMs).
Language: Python - Size: 8.18 MB - Last synced at: 3 days ago - Pushed at: 9 months ago - Stars: 6 - Forks: 6
nipreps/migas-server
Language: Python - Size: 231 KB - Last synced at: 3 days ago - Pushed at: 6 months ago - Stars: 3 - Forks: 1
nipreps/mriqcwebapi
Language: Python - Size: 326 KB - Last synced at: 3 days ago - Pushed at: about 2 years ago - Stars: 7 - Forks: 13
nipreps/sops-cookiecutter
Template repo for bootstrapping and maintaining SOPs (Standard operation procedures)
Language: Jinja - Size: 1.32 MB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 8
nipreps/NORDIC_Raw Fork of SteenMoeller/NORDIC_Raw
Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising
Size: 529 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
nipreps/nipreps
The official NiPreps Python module
Language: Shell - Size: 15.6 KB - Last synced at: 4 days ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
nipreps/qkay
Manager for the quality assessment of large neuroimaging studies
Language: HTML - Size: 145 KB - Last synced at: 2 months ago - Pushed at: 12 months ago - Stars: 4 - Forks: 3
nipreps/nipreps-book
Language: Dockerfile - Size: 161 MB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 6
nipreps/gradunwarp Fork of Washington-University/gradunwarp
fork of HCP gradunwarp tool for Gradient Unwarping in Python
Language: Python - Size: 2.54 MB - Last synced at: 11 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
nipreps/202405-sprint
Nipreps sprint, Cambridge, MA, May 15-17, 2024
Size: 12.7 KB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
nipreps/resampler
Single-shot resampling utility for nipreps derivatives
Language: Python - Size: 76.2 KB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 2
nipreps/fmriprep-rodents
fMRIPrep for Rodents
Language: HTML - Size: 22 MB - Last synced at: 7 days ago - Pushed at: almost 2 years ago - Stars: 12 - Forks: 7
nipreps/dmriprep-viewer
Interactive dmriprep report HTML, JS & CSS
Language: Vue - Size: 52.7 MB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 6
nipreps/qc-book
ISMRM '22 QC Tutorial
Language: Dockerfile - Size: 675 MB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 10 - Forks: 6
nipreps/skeleton Fork of jaraco/skeleton
A generic project skeleton for Python projects.
Size: 292 KB - Last synced at: 11 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
nipreps/petprep
PETPrep: A Robust Preprocessing Pipeline for PET Data
Language: Python - Size: 128 MB - Last synced at: 2 months ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0
nipreps/petqc
PETQC: image quality metrics for quality assessment of PET data
Size: 4.88 KB - Last synced at: 2 months ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
nipreps/nondefaced-detector
Identify non-defaced datasets before publication
Language: Python - Size: 69 MB - Last synced at: 15 days ago - Pushed at: about 2 years ago - Stars: 6 - Forks: 1
nipreps/Cookiecutter
Template for NiPreps repositories
Size: 4.88 KB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
nipreps/TM-meetings
Size: 8.79 KB - Last synced at: 7 days ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
nipreps/micro-nipype Fork of nipy/nipype
Workflows and interfaces for neuroimaging packages
Size: 73.8 MB - Last synced at: 11 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0
nipreps/mriqc-notebooks
A repository associated to MRIQC containing notebooks and other resources
Language: Jupyter Notebook - Size: 1.8 MB - Last synced at: 2 months ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 0
nipreps/mriqcwebapi-schemas
Schemas for the MRIQC WebAPI
Language: Python - Size: 6.84 KB - Last synced at: 2 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
nipreps/generalizable-brain-extraction
Generalizing antsBrainExtraction across populations and species
Language: Python - Size: 17.6 KB - Last synced at: 2 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1
nipreps/molQC
Automated Quality Control and visual reports for Quality Assessment of molecular brain imaging (PET, SPECT)
Size: 4.88 KB - Last synced at: 2 months ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0
nipreps/molprep
MolPrep is a robust and easy-to-use pipeline for preprocessing of diverse molecular imaging data (PET, SPECT). The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Size: 4.88 KB - Last synced at: 2 months ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0