GitHub / pblaney 3 Repositories
Bioinformatics Analyst
pblaney/devgru
Developmental environment for GenomicRanges utilities
Language: R - Size: 14.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0
pblaney/JaBbA Fork of mskilab-org/JaBbA
MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
Size: 17.5 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
pblaney/Exp-Hematol-Oncol-14-2025 Fork of dgagler/5TGM1-Stromal
Repository for analysis in "A proinflammatory response and polarized differentiation of stromal elements characterizes the murine myeloma bone marrow niche" from Ghamlouch, H., Gagler, D.C., Blaney, P. et al.
Language: R - Size: 28.3 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
pblaney/mgp1000
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
Language: Nextflow - Size: 324 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 11 - Forks: 5
pblaney/peakCombiner Fork of Novartis/peakCombiner
The fully R based tool peakCombiner is a user-friendly, transparent, modular and customizable package with the purpose to create a consensus peak file from genomic input regions. The aim is to allow even novice R users to create good quality combined peak sets to be used as the starting point for most downstream differential analyses.
Language: R - Size: 78.1 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
pblaney/pcawgAdditiveVariance Fork of gersteinlab/pcawgAdditiveVariance
Additive variance of non-coding passengers in Multiple Myeloma
Language: MATLAB - Size: 5.61 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
pblaney/RSeqLib Fork of mskilab-org/RSeqLib
R interface to SeqLib
Language: C - Size: 27.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
pblaney/readsupport Fork of mskilab-org/readsupport
Computes read support for arbitrary junctions and contigs for single, paired-end, and linked reads
Size: 1.02 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
pblaney/scXploringTheNiche
Single-cell eXploring the Bone Marrow Niche
Language: Makefile - Size: 30.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
pblaney/Leukemia-36-2022
Repository for analysis in "Improving prognostic assignment in older adults with multiple myeloma using acquired genetic features, clonal hemopoiesis and telomere length." from Boyle, E.M., Williams, L., Blaney, P. et al.
Language: R - Size: 18.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
pblaney/mgp1000-docs
Docs for the MGP1000
Language: MDX - Size: 2.9 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
pblaney/cHealth
Clonal hemopoiesis and telomere length, analysis included in Leukemia; https://doi.org/10.1038/s41375-021-01320-3
Language: R - Size: 11.8 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
pblaney/battenberg Fork of Wedge-lab/battenberg
Battenberg R package for subclonal copynumber estimation
Language: R - Size: 975 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
pblaney/dryclean Fork of mskilab-org/dryclean
Irons out wrinkles in noisy coverage data using robust PCA
Size: 1.63 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
pblaney/subscriptr
SLURM Scripts for BigPurple
Language: Shell - Size: 40 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
pblaney/mmsig Fork of evenrus/mmsig
A method for fitting a known mutational signature reference to mutational catalogues from cancer samples
Language: R - Size: 8.51 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0