pgleeson/openneurolab

Gleeson Lab of Open Neuroscience & AI @ UCL

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pgleeson/testpoint3

Test

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pgleeson/neuralensemble-docker Fork of NeuralEnsemble/neuralensemble-docker

Docker images for neuroscience

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pgleeson/redmine Fork of redmine/redmine-old

Redmine is a flexible project management web application written using Ruby on Rails framework.

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pgleeson/org.lemsml.model Fork of borismarin/org.lemsml.model

Prototype of org.lemsml.model

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pgleeson/neuroml2model Fork of NeuroML/neuroml2model

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pgleeson/expr-parser Fork of LEMS/expr-parser

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pgleeson/sibernetic Fork of openworm/sibernetic

This is a C++ implementation of the Contractile SPH (Electrofluid) algorithm applied to C. elegans locomotion

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pgleeson/dandi-archive Fork of dandi/dandi-archive

DANDI API server and Web app

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pgleeson/Cvapp-NeuroMorpho.org

Version of Cvapp as used on NeuroMorpho.org. Based on Robert Cannon's initial implementation.

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pgleeson/ngc-learn Fork of ago109/ngc-learn

NGC-Learn: Predictive Coding and Neurobiologically-Motivated Learning in Python

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pgleeson/wormneuroatlas Fork of francescorandi/wormneuroatlas

Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), monoaminergic connectome (Bentley et al.), and chemical-synapse sign predictions (Fenyves et al.) all in one place. Read the docs: https://francescorandi.github.io/wormneuroatlas/

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pgleeson/codespacesDemo

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pgleeson/BabbageAnalyticalEngine

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pgleeson/CA1-Oriens-Lacunosum-Moleculare---Saraga-et-al.-2003 Fork of agmccrei/CA1-Oriens-Lacunosum-Moleculare---Saraga-et-al.-2003

Saraga F, Wu CP, Zhang L, Skinner FK (2003) Active Dendrites and Spike Propagation in Multi-compartment Models of Oriens-Lacunosum/Moleculare Hippocampal Interneurons. J Physiol 552(3):673-689

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pgleeson/CA1-Oriens-Lacunosum-Moleculare---Lawrence-et-al.-2006 Fork of agmccrei/CA1-Oriens-Lacunosum-Moleculare---Lawrence-et-al.-2006

Lawrence JJ, Saraga F, Churchill JF, Statland JM, Travis KE, Skinner FK, McBain CJ (2006) Somatodendritic Kv7-KCNQ-M channels control interspike interval in hippocampal interneurons. J Neurosci 26:12325-38

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pgleeson/domoTest Fork of borismarin/domoTest

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pgleeson/pv-fast-firing-ferguson-2013 Fork of fskinner1/pv-fast-firing-ferguson-2013

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pgleeson/genesis2.4gamma Fork of borismarin/genesis2.4gamma

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pgleeson/BillingsEtAl2014_GCL_Models Fork of epiasini/BillingsEtAl2014_GCL_Models

Integrate and fire cerebellar granule cell layer model

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pgleeson/neuronvisio Fork of mattions/neuronvisio

A Graphical User Interface with 3D Visualization features for NEURON simulation enviroment

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pgleeson/pylems Fork of LEMS/pylems

LEMS interpreter implemented in Python

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pgleeson/UCL_NeuroDataShare2023 Fork of int-brain-lab/UCL_NeuroDataShare2023

examples of scripts how to use IBL-BWM dataset

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pgleeson/CE_locomotion Fork of edizquierdo/CE_locomotion

Neuromechanical model of locomotion in C. elegans (in collaboration with Dr. Erick Olivares and Prof. Randall Beer)

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pgleeson/M1_NetPyNE_CellReports_2023 Fork of suny-downstate-medical-center/M1_NetPyNE_CellReports_2023

Multiscale model of mouse primary motor cortex (M1) circuits developed in NetPyNE

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pgleeson/testerweb Fork of znamlab/senses-in-motion

Senses in Motion Symposium website

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pgleeson/FunctionalScala Fork of functional-scala/website

The website for Functional Scala

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pgleeson/gsoc2016__brian2lems Fork of brian-team/gsoc2016

Google Summer of Code project 2016 (Importing and exporting simulator-independent model-descriptions with the Brian simulator)

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pgleeson/Neuropeptide-Connectome Fork of LidiaRipollSanchez/Neuropeptide-Connectome

Scripts to run the analysis shown in the paper https://doi.org/10.1101/2022.10.30.514396

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pgleeson/GoCModel_Basic Fork of harshagurnani/GoCModel_Basic

network of gocs with low frequency background inputs

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pgleeson/DANDIArchiveShowcase Fork of OpenSourceBrain/DANDIArchiveShowcase

Scripts for interacting with the DANDI Archive

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pgleeson/Spatio-Temporal_Project

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pgleeson/NLP-MDF Fork of Ivy8127/NLP-MDF

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pgleeson/Brain-Cog Fork of BrainCog-X/Brain-Cog

Brain-inspired Cognitive Intelligence Engine (BrainCog) is a brain-inspired spiking neural network based platform for simulating the cognitive brains of different animal species at multiple scales and realizing brain-inspired Artificial Intelligence. The long term goal of BrainCog is to provide a comprehensive theory and system to decode the mechanisms and principles of human intelligence and its evolution, and develop artificial brains for brain-inspired conscious living machines in future human-machine society.

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pgleeson/intel-opencl-installer

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pgleeson/nrn Fork of neuronsimulator/nrn

NEURON Simulator

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pgleeson/PsyNeuLink Fork of PrincetonUniversity/PsyNeuLink

A block modeling system for cognitive neuroscience

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pgleeson/eden Fork of spanag/eden

Read-only mirror code repository for the EDEN neural simulator, on Github. ❗Please go to the main repo for issues, pull requests, and other interaction: https://gitlab.com/neurocomputing-lab/Inferior_OliveEMC/eden

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pgleeson/MDF Fork of ModECI/MDF

This repository contains the source for the MDF specification and Python API

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pgleeson/netpyne0 Fork of suny-downstate-medical-center/netpyne

Network development framework for Python-NEURON

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pgleeson/pycog Fork of frsong/pycog

Train excitatory-inhibitory recurrent neural networks for cognitive tasks.

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pgleeson/NetPyNE-UI Fork of MetaCell/NetPyNE-UI

NetPyNE User interface

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pgleeson/nwb_conversion Fork of derekhoward/nwb_conversion

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pgleeson/matlab_tests

Matlab tests

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pgleeson/morphology_include

Test for https://github.com/NeuroML/NeuroML2/issues/150

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pgleeson/Leech-8Cell-Tutorial-NeuroML Fork of RonCalabreseLab/Leech-8Cell-Tutorial-NeuroML

8 Cell Leech Tutorial converted to NeuroML

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pgleeson/combine-org.github.io Fork of combine-org/combine-org.github.io

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pgleeson/Morphologies Fork of WardDPeeters/Morphologies

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pgleeson/hnn Fork of jonescompneurolab/hnn

The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.

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pgleeson/sonata Fork of AllenInstitute/sonata

Collaboration between BBP and AIBS

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pgleeson/netpyne_workspace Fork of Neurosim-lab/netpyne_workspace

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pgleeson/OpenWormData Fork of openworm/OpenWormData

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pgleeson/ghk-nernst Fork of OpenSourceBrain/ghk-nernst

Using Goldman-Hodgkin-Katz and Nernst from LEMS/NeuroML

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pgleeson/bindsnet Fork of BindsNET/bindsnet

Simulation of spiking neural networks (SNNs) using PyTorch.

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pgleeson/point-neuron-fitted-in-Brain Fork of DepartmentofNeurophysiology/point-neuron-fitted-in-Brian

Code to fit single neuron models to Lantyer et al. database in Brian

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pgleeson/onnx Fork of onnx/onnx

Open standard for machine learning interoperability

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pgleeson/hbnm Fork of murraylab/hbnm

Hierarchical brain network model (Demirtas et al., 2019)

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pgleeson/nwb-jupyter-widgets Fork of NeurodataWithoutBorders/nwbwidgets

Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.

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pgleeson/nwb_hackathons Fork of NeurodataWithoutBorders/nwb_hackathons

Repository for collecting materials from nwb hackathons

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pgleeson/test_demo_osb

Testing OSB

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pgleeson/moose-core Fork of BhallaLab/moose-core

C++ basecode and python scripting interface

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pgleeson/bmtk Fork of AllenInstitute/bmtk

Brain Modeling Toolkit

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pgleeson/nwb-explorer Fork of MetaCell/nwb-explorer

NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files

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pgleeson/rate

Initial ideas on expressing rate based models in NeuroML/LEMS

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pgleeson/org.openworm.website Fork of openworm/openworm.github.io

OpenWorm Website

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pgleeson/tvb-lems Fork of maedoc/tvb-lems

TVB models with LEMS

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pgleeson/GoC_Network_public Fork of harshagurnani/GoC_Network_public

Biophysical model of Golgi network - NeuroML2 description

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pgleeson/PyNN Fork of NeuralEnsemble/PyNN

A Python package for simulator-independent specification of neuronal network models.

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pgleeson/IONML Fork of Heidecamper/IONML

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pgleeson/test_repo3

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pgleeson/visualization Fork of NeurodataWithoutBorders/visualization

[DEPRECATED] Visualizations for data stored in the NWB < 2.0

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pgleeson/multi

Testing...

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pgleeson/TestNeuroMorpho

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pgleeson/flysim Fork of yc-h/flysim

a spiking neural network simulator

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pgleeson/LFPy Fork of LFPy/LFPy

Python-module for calculation of extracellular potentials from multicompartment neuron models

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pgleeson/Arkheia Fork of antolikjan/Arkheia

A simple client-server solution for convenient storage, exploration and sharing of neural simulation specifications and results.

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pgleeson/test_lfs

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pgleeson/testtune

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pgleeson/test1234aa

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pgleeson/embedded Fork of epiasini/embedded

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pgleeson/test1

Test

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pgleeson/NetPyNEShowcase Fork of OpenSourceBrain/NetPyNEShowcase

NetPyNE & NeuroML interactions

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pgleeson/Test_OSB_NeuroMorpho

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pgleeson/temp_destexhe_jcns_2009

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pgleeson/model_completion_dashboard Fork of openworm/model_completion_dashboard

Model Completion Dashboard

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pgleeson/ca1 Fork of mbezaire/ca1

ca1 repository from 2017, linked to Open Source Brain

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pgleeson/SadehClopathRotter2015 Fork of sdrsd/SadehClopathRotter2015

Language: Python - Size: 1.69 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

pgleeson/tracker-commons Fork of openworm/tracker-commons

Compilation of information and code bases related to open-source trackers for C. elegans

Language: Python - Size: 1.9 MB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

pgleeson/lems-domogen-maven-plugin Fork of LEMS/lems-domogen-maven-plugin

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pgleeson/api-python Fork of NeurodataWithoutBorders/api-python

Language: Python - Size: 814 KB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

pgleeson/TempRepo2

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pgleeson/SilverLab-Microscopy-OS1 Fork of thodoroukos/SilverLab-Microscopy-OS1

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pgleeson/CElegansNeuroML Fork of nmsutton/CElegansNeuroML

NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302

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pgleeson/Mig3DTest Fork of JustasB/Mig3DTest

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pgleeson/neurotune Fork of NeuralEnsemble/neurotune

Language: Python - Size: 1.85 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

pgleeson/pyelectro Fork of NeuralEnsemble/pyelectro

Analysis of electrophysiology in Python

Language: Python - Size: 626 KB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 2 - Forks: 0

pgleeson/hodgkin_huxley_tutorial Fork of openworm/hodgkin_huxley_tutorial

Hodgkin Huxley Tutorial

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pgleeson/jLEMSDev Fork of LEMS/jLEMS

Java Interpreter for the Low Entropy Model Specification language

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pgleeson/org.geppetto.samples Fork of openworm/org.geppetto.samples

Sample simulations for Geppetto

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pgleeson/neuroml_use_case Fork of epiasini/neuroml_use_case

An example of what is needed from a Python package for the manipulation of LEMS and NeuroML files and associated simulations.

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