GitHub / plger 20 repositories

like sailors who on the open sea must reconstruct their ship but are never able to start afresh from the bottom...

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plger/scDblFinder

Methods for detecting doublets in single-cell sequencing data

Language: R - Size: 12.3 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 130 - Forks: 17

plger/SEtools

A R package with tools for working with the SummarizedExperiment class.

Language: R - Size: 844 KB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 2

plger/tinySEV

Simple shiny SummarizedExperiment Viewer

Language: R - Size: 146 KB - Last synced: 3 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0

plger/plPlotTranscripts

Dynamic plots of transcripts structure using plotly

Language: R - Size: 1.49 MB - Last synced: 3 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

plger/RNAontheBENCH

A benchmarking resource for RNAseq quantification and differential expression analysis methods

Language: R - Size: 17.5 MB - Last synced: 3 months ago - Pushed: about 5 years ago - Stars: 7 - Forks: 5

plger/overlapper

A shiny app to explore overlaps between lists

Language: R - Size: 37.1 KB - Last synced: 3 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

plger/OSCA.advanced Fork of OSCA-source/OSCA.advanced

Advanced steps of the OSCA book

Language: TeX - Size: 438 KB - Last synced: 3 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

plger/OrchestratingSingleCellAnalysis Fork of Bioconductor/OrchestratingSingleCellAnalysis

Content for the OSCA Book.

Language: TeX - Size: 3.04 MB - Last synced: 3 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

plger/motifmatchr Fork of GreenleafLab/motifmatchr

Fast motif matching in R

Language: C++ - Size: 152 KB - Last synced: 3 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

plger/material Fork of JosefineRuder/material

Material for course STA426 at UZH, Fall Semester 2020

Size: 184 MB - Last synced: 3 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

plger/iSEE_gviz

custom gviz panel for iSEE

Language: R - Size: 684 KB - Last synced: 3 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1

plger/iPSCpoweR

transcriptomics-based evaluation of experimental designs for iPSC disease modeling

Language: R - Size: 36.8 MB - Last synced: 3 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

plger/diffUTR_paper

Accompanies the diffUTR paper.

Language: TeX - Size: 135 MB - Last synced: 3 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

plger/bigAndSmallOrganoids

Comparison of the scRNAseq of big and small organoids

Size: 7.81 KB - Last synced: 3 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

plger/pipeComp

A R framework for pipeline benchmarking, with application to single-cell RNAseq

Language: R - Size: 2.57 MB - Last synced: 3 months ago - Pushed: over 2 years ago - Stars: 39 - Forks: 9

plger/sechm

Wrapper around ComplexHeatmap for SummarizedExperiment objects

Language: R - Size: 257 KB - Last synced: 3 months ago - Pushed: 7 months ago - Stars: 5 - Forks: 0

plger/7q11ngn2

Data and code relative to the study of 7q11.23 copy-number alterations in human Ngn2-driven iNeurons

Language: HTML - Size: 128 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

plger/clustView

shiny viewer for browsing and annotating clusters

Language: R - Size: 24.4 KB - Last synced: 3 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

plger/scDblFinder_paper

Code for the scDblFinder paper

Language: HTML - Size: 61.6 MB - Last synced: 3 months ago - Pushed: 12 months ago - Stars: 0 - Forks: 0

plger/SRAdownload

Bash script to download fastq files from the SRA, with priority to european servers

Language: Shell - Size: 23.4 KB - Last synced: 3 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0