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GitHub / pranathivemuri 4 repositories

research in computational biology

pranathivemuri/vessels-ct-radius

2D Skeleton of vessels and radius

Language: Python - Size: 516 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 6 - Forks: 4

pranathivemuri/hovernet_he

Language: Python - Size: 37 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 2 - Forks: 0

pranathivemuri/notion-backup Fork of darobin/notion-backup

Simple command to backup a Notion workspace

Size: 13.7 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

pranathivemuri/cell-tracking

Language: Jupyter Notebook - Size: 39 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0

pranathivemuri/data-version-control Fork of realpython/data-version-control

Size: 5.86 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

pranathivemuri/hover_net Fork of vqdang/hover_net

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

Language: Python - Size: 37 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

pranathivemuri/tflite-runtime Fork of iCorv/tflite-runtime

Compiled TensorFlow lite runtime. This interpreter-only package is a fraction the size of the full TensorFlow package and includes the bare minimum code required to run inferences with TensorFlow Lite—it includes only the tf.lite.Interpreter Python class. This small package is ideal when all you want to do is execute .tflite models and avoid wasting disk space with the large TensorFlow library.

Size: 8.71 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

pranathivemuri/napari Fork of napari/napari

napari: a fast, interactive, multi-dimensional image viewer for python

Language: Python - Size: 22.5 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

pranathivemuri/napari-animation Fork of napari/napari-animation

A napari plugin for making animations

Size: 831 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

pranathivemuri/hovernet_inference Fork of simongraham/hovernet_inference

HoVer-Net inference code for simultaneous nuclear segmentation and classification

Language: Jupyter Notebook - Size: 28.4 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

pranathivemuri/stardist Fork of stardist/stardist

StarDist - Object Detection with Star-convex Shapes

Size: 44.4 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

pranathivemuri/skeletonize

Language: Python - Size: 7.81 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 3 - Forks: 1

pranathivemuri/EndtoEnd---Predictive-modeling-using-Python Fork of Sundar0989/EndtoEnd---Predictive-modeling-using-Python

Size: 1.3 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

pranathivemuri/Bite-sized-Machine-Learning Fork of lilly-chen/Bite-sized-Machine-Learning

Simple example to illustrate machine learning concept

Size: 1.23 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

pranathivemuri/covid-if-annotations Fork of hci-unihd/covid-if-annotations

Annotation Tool for Immunofluorescence Assay Images

Size: 11.9 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

pranathivemuri/Machine-Learning-with-Python Fork of susanli2016/Machine-Learning-with-Python

Python code for common Machine Learning Algorithms

Size: 40.2 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

pranathivemuri/amazon-sagemaker-examples Fork of aws/amazon-sagemaker-examples

Example notebooks that show how to apply machine learning and deep learning in Amazon SageMaker

Language: Jupyter Notebook - Size: 27.6 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

pranathivemuri/rnaseq Fork of nf-core/rnaseq

RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

Language: Nextflow - Size: 49.7 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

pranathivemuri/2020-04-17-czbiohub

Language: HTML - Size: 3.05 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

pranathivemuri/JWave Fork of graetz23/JWave

A Discrete Fourier Transform (DFT), a Fast Wavelet Transform (FWT), and a Wavelet Packet Transform (WPT) algorithm in 1-D, 2-D, and 3-D using normalized orthogonal (orthonormal) Haar, Coiflet, Daubechie, Legendre and normalized biorthognal wavelets in Java.

Language: Java - Size: 1.52 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

pranathivemuri/bioconda-recipes Fork of bioconda/bioconda-recipes

Conda recipes for the bioconda channel.

Language: Shell - Size: 242 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

pranathivemuri/kmermaid Fork of nf-core/kmermaid

k-mer similarity analysis pipeline.

Language: Nextflow - Size: 9.19 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

pranathivemuri/vispy-example-3d

numpy array volume viewer using vispy

Language: Python - Size: 73.2 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 1

pranathivemuri/markdown-cheatsheet Fork of tchapi/markdown-cheatsheet

Markdown Cheatsheet for Github Readme.md

Size: 12.7 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

pranathivemuri/test-datasets Fork of nf-core/test-datasets

Test data to be used for automated testing with the nf-core pipelines.

Size: 1.47 GB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

pranathivemuri/Faster_RCNN_for_Open_Images_Dataset_Keras Fork of RockyXu66/Faster_RCNN_for_Open_Images_Dataset_Keras

Faster R-CNN for Open Images Dataset by Keras

Size: 16.4 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

pranathivemuri/skeletonization Fork of 3Scan/3scan-skeleton

3D Image Skeletonization Tools

Language: Python - Size: 1.65 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

pranathivemuri/image-segmentation-validation

This repo contains notebook showing grayscale to binary image segmentation and validation

Language: Jupyter Notebook - Size: 1.36 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

pranathivemuri/Floodfill

Language: Python - Size: 16.6 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0