pwwang/biopipen

A set of processes/pipelines for bioinformatics

Language: Python - Size: 41.8 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 10 - Forks: 4

pwwang/simplug

A simple plugin system for python with async hooks supported

Language: Python - Size: 586 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 6 - Forks: 3

pwwang/immunopipe

Integrative analysis for scTCR- and scRNA-seq data

Language: Python - Size: 19.4 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 13 - Forks: 2

pwwang/pipen-board

Visualizing configuration and running of pipen pipelines on the web

Language: Svelte - Size: 4.28 MB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 1 - Forks: 0

pwwang/python-varname

Dark magics about variable names in python

Language: Python - Size: 996 KB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 298 - Forks: 19

pwwang/pipen

A pipeline framework for python

Language: Python - Size: 6.12 MB - Last synced: 11 days ago - Pushed: 19 days ago - Stars: 100 - Forks: 14

pwwang/datar

A Grammar of Data Manipulation in python

Language: Python - Size: 21.4 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 255 - Forks: 17

pwwang/xqute

A job management system for python

Language: Python - Size: 847 KB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 8 - Forks: 3

pwwang/vcfstats

Powerful statistics for VCF files

Language: Python - Size: 1.69 MB - Last synced: 29 days ago - Pushed: 8 months ago - Stars: 54 - Forks: 17

pwwang/mkdocs-rtd

Language: HTML - Size: 2.65 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

pwwang/ceQTL

The co-expression Quantitative Trait Loci pipeline

Language: R - Size: 286 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 1

pwwang/plotnine-prism

Prism themes for plotnine, inspired by ggprism.

Language: Python - Size: 6.8 MB - Last synced: 22 days ago - Pushed: 11 months ago - Stars: 13 - Forks: 2

pwwang/datar-pandas

The pandas backend for datar

Language: Python - Size: 585 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 5 - Forks: 0

pwwang/pdtypes

Show data types for pandas data frames in terminal and notebooks

Language: Python - Size: 846 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 5 - Forks: 1

pwwang/pyppl_jobtime

Job running time statistics for PyPPL

Language: Python - Size: 57.6 KB - Last synced: 3 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 1

pwwang/vscode-gptcommit

Automated git commit messages using GPT models via gptcommit for VS Code.

Language: TypeScript - Size: 2.75 MB - Last synced: 3 months ago - Pushed: about 1 year ago - Stars: 186 - Forks: 5

pwwang/immunopipe-AdrienneML-2020

Reanalysis of the scRNA-seq and scTCR-seq data from Luoma, Adrienne M., et al. 2020 using immunopipe.

Language: HTML - Size: 99 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 0

pwwang/liquidpy

A port of liquid template engine for python

Language: Python - Size: 1.23 MB - Last synced: 2 months ago - Pushed: 5 months ago - Stars: 56 - Forks: 11

pwwang/pipen-cli-ref

Make reference documentation for processes

Language: Python - Size: 99.6 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

pwwang/pipda

A framework for data piping in python

Language: Python - Size: 850 KB - Last synced: 22 days ago - Pushed: 8 months ago - Stars: 35 - Forks: 3

pwwang/argx

Supercharged argparse for Python

Language: Python - Size: 86.9 KB - Last synced: 12 days ago - Pushed: 8 months ago - Stars: 4 - Forks: 0

pwwang/pyparam

Powerful parameter processing for python

Language: Python - Size: 2.52 MB - Last synced: 2 months ago - Pushed: 4 months ago - Stars: 8 - Forks: 3

pwwang/datar-numpy

The numpy backend for datar.

Language: Python - Size: 185 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 5 - Forks: 0

pwwang/pipen-poplog

Populate logs from jobs to running log of the pipeline

Language: Python - Size: 56.6 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

pwwang/immunopipe-CheonIS-2021

Reanalysis of the scRNA-seq and scTCR-seq data from Cheon, I. S., 2021 using immunopipe.

Language: HTML - Size: 28.1 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

pwwang/immunopipe-EberhardtCS-2021

Reanalysis of the scRNA-seq and scTCR-seq data from Eberhardt, Christiane S., et al., 2021 using immunopipe.

Language: HTML - Size: 35 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

pwwang/immunopipe-LiuB-2022

Reanalysis of the scRNA-seq and scTCR-seq data from Liu, B., et al. 2022 using immunopipe.

Language: HTML - Size: 99.6 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

pwwang/immunopipe-GateD-2021

Reanalysis of the scRNA-seq and scTCR-seq data from Gate, David, et al., 2021 using immunopipe.

Language: HTML - Size: 20.3 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

pwwang/immunopipe-ZhengY-2020

Reanalysis of the scRNA-seq and scTCR-seq data from Zheng, Y., et al. 2020 using immunopipe.

Language: HTML - Size: 0 Bytes - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

pwwang/immunopipe-MahuronKM-2020

Reanalysis of the scRNA-seq and scTCR-seq data from Mahuron, Kelly M., et al. 2020 using immunopipe.

Language: HTML - Size: 22 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

pwwang/immunopipe-ElhamA-2018

Reanalysis of the scRNA-seq and scTCR-seq data from Azizi, Elham, et al. 2018 using immunopipe.

Language: HTML - Size: 95.2 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

pwwang/immunopipe-ThomasW-2020

Reanalysis of the data from Wu, Thomas D., et al. 2020 using immunopipe.

Language: HTML - Size: 48.6 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

pwwang/toml-bench

Which toml package to use in python?

Language: Python - Size: 260 KB - Last synced: 4 months ago - Pushed: 8 months ago - Stars: 46 - Forks: 1

pwwang/pymedoo

A lightweight database framework for python

Language: Python - Size: 199 KB - Last synced: 4 days ago - Pushed: over 1 year ago - Stars: 15 - Forks: 4

pwwang/immunopipe-example

An example of immunopipe

Language: HTML - Size: 240 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 0

pwwang/enrichr

A python wrapper for Enrichr APIs

Language: Python - Size: 469 KB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 8 - Forks: 4

pwwang/cnn-convoluter

An interactive player for CNN convolution

Language: JavaScript - Size: 8.64 MB - Last synced: 7 months ago - Pushed: 8 months ago - Stars: 108 - Forks: 14

pwwang/datar-arrow

Language: Python - Size: 91.8 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 2 - Forks: 0

pwwang/python-simpleconf

Simple configuration management with python

Language: Python - Size: 160 KB - Last synced: 5 days ago - Pushed: 11 months ago - Stars: 6 - Forks: 2

pwwang/pipen-report

Report generation system for pipen

Language: Python - Size: 9.4 MB - Last synced: 24 days ago - Pushed: about 2 months ago - Stars: 3 - Forks: 1

pwwang/hitype

Hierarchical and high-resolution cell-type identification for single-cell RNA-seq data based on ScType.

Language: R - Size: 4.87 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

pwwang/innsight Fork of bips-hb/innsight

Interpretability methods to analyze the behavior and individual predictions of modern neural networks in R.

Language: R - Size: 84 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

pwwang/weekly Fork of ruanyf/weekly

科技爱好者周刊，每周五发布

Size: 2.48 MB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

pwwang/r-visual-test

Language: R - Size: 1.95 KB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

pwwang/vcf-annotate-polyphen Fork of hammerlab/vcf-annotate-polyphen

A tool to annotate human VCF files with PolyPhen2 effect measures

Language: Python - Size: 38.1 KB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

pwwang/theme-bobthefish Fork of oh-my-fish/theme-bobthefish

A Powerline-style, Git-aware fish theme optimized for awesome.

Language: Shell - Size: 280 KB - Last synced: 10 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

pwwang/spacefish Fork of matchai/spacefish

🚀🐟 A Fish Shell prompt for Astronauts

Language: Shell - Size: 5.2 MB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

pwwang/smelte Fork of matyunya/smelte

UI framework with material components built with Svelte and Tailwind CSS

Language: Svelte - Size: 1.47 MB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

pwwang/siuba Fork of machow/siuba

Python library for using dplyr like syntax with pandas and SQL

Size: 1.33 MB - Last synced: 10 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

pwwang/regexr

Regular expressions for humans

Language: Python - Size: 499 KB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 0

pwwang/sh Fork of amoffat/sh

Forked from https://github.com/amoffat/sh, with enhanced features.

Language: Python - Size: 3.17 MB - Last synced: 10 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 1

pwwang/rich Fork of Textualize/rich

Rich is a Python library for rich text and beautiful formatting in the terminal.

Language: Python - Size: 27.9 MB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

pwwang/rtoml Fork of samuelcolvin/rtoml

A fast TOML library for python implemented in rust.

Language: Python - Size: 123 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

pwwang/pyppl_runners

Some basic runners for PyPPL

Language: Python - Size: 60.5 KB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1

pwwang/pyppl_web

Web client to monitor pipeline processes for PyPPL

Language: JavaScript - Size: 1.21 MB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

pwwang/pyppl_strict

Language: Python - Size: 44.9 KB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1

pwwang/pyppl_runcmd

Allowing to run local command before and after each process for PyPPL

Language: Python - Size: 22.5 KB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1

pwwang/pyppl_rich

Richer information in logs for PyPPL

Language: Python - Size: 35.2 KB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 1

pwwang/pyppl_lock

Preventing running processes from running again for PyPPL

Language: Python - Size: 30.3 KB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 1

pwwang/pyppl_export

Language: Python - Size: 39.1 KB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1

pwwang/pyppl_context

Upstream and downstream process reference for PyPPL

Language: Python - Size: 18.6 KB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1

pwwang/pyppl_echo

Echo script output to PyPPL logs

Language: Python - Size: 35.2 KB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1

pwwang/pyppl_annotate

Adding long description/annotations for PyPPL processes.

Language: Python - Size: 27.3 KB - Last synced: 10 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 1

pwwang/pygff

A more general GFF/GTF parser.

Language: Python - Size: 8.79 KB - Last synced: 10 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 1

pwwang/plkit

A wrapper of pytorch-lightning that makes you write even less code.

Language: Python - Size: 701 KB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 5 - Forks: 1

pwwang/pure_eval Fork of alexmojaki/pure_eval

Safely evaluate AST nodes without side effects

Language: Python - Size: 66.4 KB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

pwwang/pwwang

Size: 1000 Bytes - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 3

pwwang/plotnine Fork of has2k1/plotnine

A grammar of graphics for Python

Language: Python - Size: 10.9 MB - Last synced: 10 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

pwwang/neutrapy

A CLI tool to build desktop applications with Neutralinojs and Python as backend

Language: Python - Size: 620 KB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 1

pwwang/pandas-tidyverse-trials Fork of Gedevan-Aleksizde/pandas-tidyverse-trials

Language: Python - Size: 12.7 KB - Last synced: 10 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

pwwang/pandas Fork of pandas-dev/pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

Size: 284 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

pwwang/mkdocs-material-2020

Try reproducing issue-2020 in mkdocs-material

Size: 317 KB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 1

pwwang/Linnorm Fork of kenshunyip/Linnorm

Language: R - Size: 8.58 MB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

pwwang/lichee Fork of viq854/lichee

Multi-sample cancer phylogeny reconstruction

Language: Java - Size: 122 MB - Last synced: 10 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 1

pwwang/immunarch Fork of immunomind/immunarch

🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

Language: R - Size: 266 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

pwwang/fish-autoenv Fork of eknkc/fish-autoenv

Autoenv for fish

Language: Shell - Size: 29.3 KB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 4 - Forks: 2

pwwang/futurecoder Fork of alexmojaki/futurecoder

A platform for beginners to learn programming in Python

Language: Python - Size: 2.9 MB - Last synced: 10 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

pwwang/executing Fork of alexmojaki/executing

Get information about what a Python frame is currently doing, particularly the AST node being executed

Language: Python - Size: 623 KB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

pwwang/fastLiquidAssociation Fork of gundt/fastLiquidAssociation

Language: R - Size: 225 KB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 1

pwwang/emoji-cheat-sheet Fork of ikatyang/emoji-cheat-sheet

A markdown version emoji cheat sheet

Size: 30.5 MB - Last synced: 10 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

pwwang/dplyr Fork of tidyverse/dplyr

dplyr: A grammar of data manipulation

Size: 47 MB - Last synced: 10 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1

pwwang/deconstruct_sigs_py Fork of vanallenlab/deconstruct_sigs_py

DeconstructSigs algorithm in python.

Language: Python - Size: 444 KB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

pwwang/datar-blog

A blog about datar

Language: Python - Size: 493 KB - Last synced: 10 months ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 1

pwwang/dataprep Fork of sfu-db/dataprep

DataPrep — The easiest way to prepare data in Python

Language: Python - Size: 148 MB - Last synced: 10 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

pwwang/corrplot Fork of taiyun/corrplot

Package corrplot is for visualizing a correlation matrix

Language: R - Size: 318 KB - Last synced: 10 months ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

pwwang/conda-jvarkit

Recipts for building jvarkit tools on conda

Language: Python - Size: 26.4 KB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1

pwwang/cnvkit Fork of etal/cnvkit

Copy number variant detection from targeted DNA sequencing

Language: Python - Size: 101 MB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

pwwang/cmdQueue

A job queue available on Windows and *nix

Language: Python - Size: 45.9 KB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 5 - Forks: 1

pwwang/Bioinformatics-cheatsheet

A cheat sheet for Bioinformatians.

Size: 229 KB - Last synced: 10 months ago - Pushed: almost 7 years ago - Stars: 11 - Forks: 5

pwwang/bioprocs-testdata

Test data for bioprocs

Size: 64.5 KB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 1

pwwang/bioconda-recipes Fork of bioconda/bioconda-recipes

Conda recipes for the bioconda channel.

Size: 352 MB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

pwwang/benchwork

A framework for benchmarking in python

Language: Python - Size: 6.84 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

pwwang/carbon-components-svelte Fork of carbon-design-system/carbon-components-svelte

Svelte implementation of the Carbon Design System

Language: Svelte - Size: 12 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

pwwang/pxGPT

pxGPT: Your personal, powerful and private GPT

Language: Python - Size: 672 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 1 - Forks: 0

pwwang/python-import-system

Python import system diagram

Language: Jupyter Notebook - Size: 16.6 KB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 15 - Forks: 3

pwwang/attr_property

Property support for attrs

Language: Python - Size: 70.3 KB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 5 - Forks: 2

pwwang/mkapi Fork of daizutabi/mkapi

A documentation generation tool for MkDocs.

Language: Python - Size: 5.67 MB - Last synced: 8 days ago - Pushed: 7 months ago - Stars: 2 - Forks: 2

pwwang/Tech-Bytes

Daily digest with curated news, tech posts, articles, and edge technologies from a wide range of reputable sources.

Size: 54.7 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 1 - Forks: 0

pwwang/pipen-runinfo

Generate running information for jobs in pipen pipelines.

Language: Python - Size: 171 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0

pwwang/pipen-log2file

Save running logs to file for pipen

Language: Python - Size: 253 KB - Last synced: 20 days ago - Pushed: 4 months ago - Stars: 1 - Forks: 0