resendislab/Modeling_Heterogeneity_Cancer_Metabolism_MICOM

Language: Jupyter Notebook - Size: 553 MB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 1 - Forks: 0

resendislab/resendislab.github.io

The (rendered) website of the Resendis lab. Do not send PRs here! Use https://github.com/resendislab/website instead!

Language: HTML - Size: 73.6 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

resendislab/POST_COVID_Metabolome_MachineLearning

Notebooks to reproduce the results of our work "Exploring Metabolic Anomalies in COVID-19 and Post-COVID-19: A Machine Learning Approach with Explainable Artificial Intelligence"

Language: Jupyter Notebook - Size: 12.3 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 1

resendislab/sc-PHENIX

Language: Jupyter Notebook - Size: 160 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 1

resendislab/corda

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

Language: Python - Size: 1.6 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 21 - Forks: 8

resendislab/MEXT2D_Networks

This repository contains all the code to implement all examples showed in our paper: The gut microbiota and the progression of preT2D to T2D are linked to keystone taxa in Mexican cohort study: A multidimensional perspective on microbial ecology

Language: HTML - Size: 26.8 MB - Last synced at: 11 months ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 1

resendislab/Microbiome_two_treatments_Metformine-Linagliptine

Language: Jupyter Notebook - Size: 7.59 MB - Last synced at: 11 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

resendislab/microbiome 📦

The standardized analysis pipeline used for analyzing 16S and metagenome data.

Language: R - Size: 9.77 MB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 5 - Forks: 2

resendislab/docker_mini_training

Material for the Docker mini training at INMEGEN.

Language: Python - Size: 21.5 KB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 1

resendislab/rater

A flask app to rate and review participants of a conference.

Language: Python - Size: 249 KB - Last synced at: over 1 year ago - Pushed at: almost 9 years ago - Stars: 0 - Forks: 0

resendislab/mext2d

Analysis scripts and materials for the MEXT2D project.

Language: HTML - Size: 121 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 2

resendislab/DifEquations-macrophage

Language: Jupyter Notebook - Size: 243 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

resendislab/micom Fork of micom-dev/micom

Python package to study microbial communities using metabolic modeling.

Language: Python - Size: 3.24 MB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 2 - Forks: 1

resendislab/website

Our group website files for Hugo. Send PRs for updates here.

Language: HTML - Size: 70.5 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

resendislab/mb-PHENIX

Language: Jupyter Notebook - Size: 5.87 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

resendislab/Covid-19_scRNAseq

Language: R - Size: 136 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

resendislab/scPipeline

Language: R - Size: 614 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

resendislab/M1-M2-Macrophage-Polarization

Language: R - Size: 118 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

resendislab/Targeting-glycolysis-metabolism-DataModels Fork of pipemg/Targeting-glycolysis-metabolism-DataModels

Size: 825 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

resendislab/mbtools Fork of Gibbons-Lab/mbtools

R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.

Language: R - Size: 49.4 MB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 1

resendislab/micom_study

Additional materials for the micom manuscript.

Language: Python - Size: 81 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 2

resendislab/scFBA Fork of BIMIB-DISCo/scFBA

Language: MATLAB - Size: 18.1 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

resendislab/dycone Fork of cdiener/dycone

Analyze enzyme regulation with metabolome data.

Language: R - Size: 386 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

resendislab/proliferation Fork of cdiener/proliferation

Project to study proliferation and metabolic liabilities across several thousand cancer samples.

Language: R - Size: 29.2 MB - Last synced at: about 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0

resendislab/cobrame-docker

Docker image for a full ME model stack.

Language: Jupyter Notebook - Size: 8.53 MB - Last synced at: about 2 years ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0