Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub / samtools 15 repositories
samtools/htscodecs
Custom compression for CRAM and others.
Language: C - Size: 20 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 26 - Forks: 15
samtools/htslib
C library for high-throughput sequencing data formats
Language: C - Size: 12.4 MB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 775 - Forks: 446
samtools/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
Language: Java - Size: 155 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 273 - Forks: 244
samtools/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
Language: TeX - Size: 43 MB - Last synced: 9 days ago - Pushed: 27 days ago - Stars: 624 - Forks: 175
samtools/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Language: C - Size: 14.6 MB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 1,548 - Forks: 570
samtools/c-maint
Maintenance scripts used with the htslib/samtools/bcftools repositories
Language: Perl - Size: 40 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 3 - Forks: 3
samtools/bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Language: C - Size: 19.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 619 - Forks: 234
samtools/tabix 📦
Note: tabix and bgzip binaries are now part of the HTSlib project.
Language: C - Size: 143 KB - Last synced: 14 days ago - Pushed: almost 3 years ago - Stars: 91 - Forks: 40
samtools/klib Fork of attractivechaos/klib
A standalone and lightweight C library
Size: 1.2 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
samtools/samtools.github.com
The http://samtools.github.io/ (master) and legacy http://samtools.sourceforge.net/ (sf-pages) web sites
Language: CSS - Size: 113 KB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 1
samtools/htslib-plugins
Plugins for use with HTSlib
Language: C - Size: 42 KB - Last synced: about 2 months ago - Pushed: about 3 years ago - Stars: 9 - Forks: 7
samtools/htslib-crypt4gh
HTSlib crypt4gh plug-in
Language: C - Size: 47.9 KB - Last synced: about 2 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 2
samtools/sapi
Sequence Alignment Programming Interface
Language: C - Size: 89.8 KB - Last synced: about 2 months ago - Pushed: about 12 years ago - Stars: 7 - Forks: 0
samtools/www.htslib.org
The http://www.htslib.org/ web site
Language: HTML - Size: 2.62 MB - Last synced: about 2 months ago - Pushed: 4 months ago - Stars: 8 - Forks: 12
samtools/htsjdk-next-beta
Staging ground for the development of the next major version of HTSJDK
Language: Java - Size: 107 KB - Last synced: about 2 months ago - Pushed: about 5 years ago - Stars: 6 - Forks: 3