sfu-mial/awesome-skin-image-analysis-datasets

Datasets for skin image analysis

Size: 20.5 KB - Last synced at: 4 days ago - Pushed at: 4 months ago - Stars: 39 - Forks: 7

sfu-mial/DermSynth3D

Official code for "DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images". A data generation pipeline for creating photorealistic in-the-wild synthetic dermatalogical data with rich multi-task annotations for various skin-analysis tasks.

Language: Jupyter Notebook - Size: 287 MB - Last synced at: 3 days ago - Pushed at: 12 months ago - Stars: 27 - Forks: 3

sfu-mial/VascuSynth

VascuSynth is short for Vascular Synthesizer: An algorithm and accompanying software for synthesizing vascular or other tubular, tree-like structures

Language: C++ - Size: 254 KB - Last synced at: 3 days ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 2

sfu-mial/Corrected-Skin-Image-Datasets

Mirror of https://github.com/kakumarabhishek/Corrected-Skin-Image-Datasets.

Language: Jupyter Notebook - Size: 815 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

sfu-mial/TreeDiffusion

Official Code for "Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields"

Language: Python - Size: 35.5 MB - Last synced at: 3 days ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

sfu-mial/LesionElevation

[MICCAI ISIC 2024] Code for "Lesion Elevation Prediction from Skin Images Improves Diagnosis"

Size: 4.88 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

sfu-mial/StyleSeg

[MICCAI ISIC 2024] Code for "Segmentation Style Discovery: Application to Skin Lesion Images"

Size: 4.88 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

sfu-mial/nERdy

This repository provides code for training, inference of endoplasmic reticulum segmentation method nERdy+, and the analysis of the dynamics presented in the paper nERdy: network analysis of endoplasmic reticulum dynamics

Language: Python - Size: 6.42 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

sfu-mial/MaskTune

Language: Python - Size: 249 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

sfu-mial/SLiMe

1-shot image segmentation using Stable Diffusion

Language: Python - Size: 23.5 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

sfu-mial/CIRCLe

CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions. Mirror of https://github.com/arezou-pakzad/CIRCLe

Language: Python - Size: 363 KB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 2

sfu-mial/mial-hamarneh-repository-template

A template to accelerate the release of state of the art software accompanying papers released at Prof. Hamarneh's medicalimageanalysis.com

Language: Python - Size: 349 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 1

sfu-mial/DOTNet

Addresses the problem of reconstructing images acquired by diffuse optical tomography using deep learning.

Language: Python - Size: 26 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

sfu-mial/MultiNet

Repository for our deep multitask paper in DOT imaging.

Language: Python - Size: 25.5 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

sfu-mial/LADOTNet

Repository for our limited angle deep learning based DOT image reconstruction

Language: Python - Size: 24.4 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

sfu-mial/skin3d

Mirror of https://github.com/jeremykawahara/skin3d

Language: Jupyter Notebook - Size: 612 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

sfu-mial/SmlmTools.jl

Computational tools for single molecule localization / superresolution microscopy (point clouds). Mirror of https://github.com/bencardoen/SmlmTools.jl

Language: Julia - Size: 7.23 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

sfu-mial/SPECHT.jl

SPECHT is a Julia implementation of a contrastive weakly supervised object detection and identification method for fluorescence microscopy. Mirror of https://github.com/bencardoen/SPECHT.jl

Language: Julia - Size: 10.3 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

sfu-mial/SubPrecisionContactDetection.jl

A Julia package to detect contacts below the precision of a superresolution microscope between 2 subcellular organelles in 2-channel superresolution (STED) microscopy. Mirror of https://github.com/bencardoen/SubPrecisionContactDetection.jl

Language: Julia - Size: 2.33 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

sfu-mial/smlmvis

Superresolution visualization of 3D protein localization data from a range of microscopes . Mirror of https://github.com/bencardoen/smlmvis

Language: Jupyter Notebook - Size: 12.7 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

sfu-mial/SlurmMonitor.jl

SLURM Monitor to detect node health and notify Slack in case of events. Mirror of https://github.com/bencardoen/SlurmMonitor.jl

Language: Julia - Size: 61.5 KB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

sfu-mial/singularity_slurm_cuda

Example on how to leverage Singularity on HPC. Mirror of https://github.com/bencardoen/singularity_slurm_cuda

Language: Shell - Size: 186 KB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

sfu-mial/skin-lesion-segmentation-survey

Size: 102 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

sfu-mial/LogParadox.jl

Detects sufficient and necessary conditions for pattern inversion conditional on log transform Mirror of https://github.com/bencardoen/LogParadox.jl

Language: Julia - Size: 1.28 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

sfu-mial/labtools

A set of scripts to streamline remote working with clusters. Mirror of https://github.com/bencardoen/labtools

Language: Shell - Size: 34.2 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

sfu-mial/ERGO.py

Mirror of https://github.com/bencardoen/ERGO.py

Language: Python - Size: 33.2 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

sfu-mial/ERGO.jl

Object / density detection in astigmatic superresolution dSTORM microscopy. Mirror of https://github.com/bencardoen/ERGO.jl

Language: Jupyter Notebook - Size: 17.3 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

sfu-mial/ERGO

ERGO: Efficient Recurrent Graph Optimized Emitter Density Estimation in Single Molecule Localization Microscopy Mirror of https://github.com/bencardoen/ERGO

Size: 2.93 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

sfu-mial/DataCurator.jl

A scalable Julia package to transparently validate and transform large biomedical datasets using human readable recipes that are translated to machine verifiable templates. Mirror of https://github.com/bencardoen/DataCurator.jl

Language: Julia - Size: 52.3 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

sfu-mial/Colocalization.jl

Colocalization metrics and distances for images or their sparse representations. Mirror of https://github.com/bencardoen/Colocalization.jl

Language: Julia - Size: 176 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

sfu-mial/cmpt_340_4

This is your first repository

Language: Python - Size: 328 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

sfu-mial/IDE-tips-tricks

Gist to collect urls/tips/tricks/configs for setup of IDEs (VSCode, vi, neovim, cgpt, copilot, ...)

Size: 4.88 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1

sfu-mial/FuseNet

Repository for our deep multi-frequency fusion paper in DOT imaging.

Language: Python - Size: 30.7 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

sfu-mial/Rank2Count

The official repository for the paper "Learning-to-Count by Learning-to-Rank", accepted as an oral presentation at CRV2023

Language: Jupyter Notebook - Size: 840 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0