shz9/viprs

Variational Inference of Polygenic Risk Scores

Language: Python - Size: 9.36 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 15 - Forks: 0

shz9/magenpy

Modeling and Analysis of (Statistical) Genetics data in python

Language: Python - Size: 2.94 MB - Last synced: about 6 hours ago - Pushed: about 7 hours ago - Stars: 16 - Forks: 5

shz9/vcf-zarr-publication Fork of sgkit-dev/vcf-zarr-publication

Manuscript and associated scripts for vcf-zarr publication

Language: TeX - Size: 1.11 MB - Last synced: 11 days ago - Pushed: 12 days ago - Stars: 0 - Forks: 0

shz9/tokyo-symposium-2024

Tokyo Symposium on Genomic Medicine (2024)

Language: Jupyter Notebook - Size: 1.5 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 3 - Forks: 0

shz9/single-neuron-experiment

Experiments with teaching a single neuron the genetic code

Language: Python - Size: 8.08 MB - Last synced: 6 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

shz9/unbiased-ldsc

Assumptions about frequency-dependent architectures of complex traits bias measures of functional enrichment

Language: Jupyter Notebook - Size: 27.8 MB - Last synced: 6 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

shz9/stratified-vs-mega-gwas

A comparative analysis of stratified vs. mega analysis strategies for GWAS.

Language: Python - Size: 3.72 MB - Last synced: 6 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

shz9/shz9.github.io

Personal website

Language: CSS - Size: 1.28 MB - Last synced: 6 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

shz9/neutral-phenotype-model

Scripts and data for our manuscript on "Evolutionary dynamics of neutral phenotypes under DNA substitution models"

Language: Jupyter Notebook - Size: 18.2 MB - Last synced: 6 months ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

shz9/msprime Fork of tskit-dev/msprime

Simulate genealogical trees and genomic sequence data using population genetic models

Language: Python - Size: 14.1 MB - Last synced: 6 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

shz9/msp-gen Fork of ivan-krukov/msp-gen

Driver scripts for genealogy simulations with msprime

Language: Python - Size: 310 KB - Last synced: 6 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

shz9/mvbin

A script for generating multivariate and correlated binary data.

Language: Python - Size: 1.95 KB - Last synced: 6 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

shz9/csc2431-project

Unsupervised DNA Methylation Analysis

Language: Python - Size: 1.09 GB - Last synced: 6 months ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0

shz9/viprs-paper

Reproducible code for running the analyses in the paper "Fast and Accurate Bayesian Polygenic Risk Modeling with Variational Inference" (2022)

Language: Python - Size: 39.2 MB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 5 - Forks: 1

shz9/csc2541-ml-project

Modeling Uncertainty in RNNs for Time Series Forecasting

Language: Python - Size: 43 MB - Last synced: 6 months ago - Pushed: over 6 years ago - Stars: 13 - Forks: 5

shz9/phasedibd Fork of 23andMe/phasedibd

Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)

Language: Cython - Size: 16.1 MB - Last synced: 6 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

shz9/graph-alignment

Siamese Neural Network Architecture for Graph Alignment

Language: TSQL - Size: 249 MB - Last synced: 6 months ago - Pushed: about 4 years ago - Stars: 6 - Forks: 2

shz9/ldsc Fork of bulik/ldsc

LD Score Regression (LDSC)

Language: Python - Size: 55.1 MB - Last synced: 6 months ago - Pushed: over 3 years ago - Stars: 5 - Forks: 2

shz9/DeepLoc-VAE

Semi-supervised VAE model for protein localization prediction from microscopy images

Language: Python - Size: 76.2 MB - Last synced: 6 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0

shz9/Getting-and-Cleaning-Data-Course-Project

Language: R - Size: 195 KB - Last synced: 6 months ago - Pushed: almost 10 years ago - Stars: 0 - Forks: 0

shz9/RepData_PeerAssessment1 Fork of rdpeng/RepData_PeerAssessment1

Peer Assessment 1 for Reproducible Research

Size: 650 KB - Last synced: 6 months ago - Pushed: almost 10 years ago - Stars: 0 - Forks: 0

shz9/ExData_Plotting1 Fork of rdpeng/ExData_Plotting1

Plotting Assignment 1 for Exploratory Data Analysis

Language: R - Size: 242 KB - Last synced: 6 months ago - Pushed: almost 10 years ago - Stars: 0 - Forks: 0

shz9/ProgrammingAssignment2 Fork of rdpeng/ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

Language: R - Size: 104 KB - Last synced: 6 months ago - Pushed: about 10 years ago - Stars: 0 - Forks: 0