single-cell-genetics/XClone

Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.

Language: Python - Size: 4.26 MB - Last synced: about 15 hours ago - Pushed: 1 day ago - Stars: 21 - Forks: 2

single-cell-genetics/vireo

Demultiplexing pooled scRNA-seq data with or without genotype reference

Language: Python - Size: 4.39 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 66 - Forks: 23

single-cell-genetics/MQuad

Tool for modelling of mitochondrial heteroplasmy

Language: Python - Size: 7.71 MB - Last synced: 20 days ago - Pushed: about 1 month ago - Stars: 14 - Forks: 9

single-cell-genetics/cellsnp-lite

Efficient genotyping bi-allelic SNPs on single cells

Language: C - Size: 824 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 115 - Forks: 11

single-cell-genetics/limix_qtl

Language: Python - Size: 3 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 15 - Forks: 13

single-cell-genetics/cardelino

Clone identification from single-cell data

Language: R - Size: 9.8 MB - Last synced: 12 days ago - Pushed: over 1 year ago - Stars: 57 - Forks: 12

single-cell-genetics/cellSNP

Pileup biallelic SNPs from single-cell and bulk RNA-seq data

Language: Python - Size: 224 KB - Last synced: 14 days ago - Pushed: almost 2 years ago - Stars: 71 - Forks: 11

single-cell-genetics/singlecell_neuroseq_paper

Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation

Language: Jupyter Notebook - Size: 39.4 MB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 18 - Forks: 6

single-cell-genetics/optimising_singlecell_eqtl_paper

Repository containing the code to reproduce the analyses contained in our manuscript: Optimising expression quantitative trait locus mapping workflows for single-cell studies

Language: Jupyter Notebook - Size: 422 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 1

single-cell-genetics/singlecell_endodiff_paper

Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression

Language: Jupyter Notebook - Size: 43.5 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 11 - Forks: 8