sriram-lab/M2D2

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sriram-lab/emt-cobra

Modeling the metabolic changes during the epithelial-to-mesenchymal transition.

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sriram-lab/TACTIC

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sriram-lab/INDIGOpy

Implementation of INDIGO (INferring Drug Interactions using chemoGenomics and Orthology) as a Python package.

Language: Python - Size: 118 MB - Last synced at: about 1 month ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

sriram-lab/CARAMeL

Condition-specific Antibiotic Regimen Assessment using Mechanistic Learning

Language: MATLAB - Size: 479 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

sriram-lab/quiescence-depth-modulation

Leveraging Metabolic Modeling and Machine Learning to Uncover Modulators of Quiescence Depth

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sriram-lab/SCOOTI

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sriram-lab/metabolicmodeling

Constraint-based metabolic modeling software from the Chandrasekaran Lab

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sriram-lab/egem

epigenome scale metabolic modeling for cancer metabolism

Language: MATLAB - Size: 478 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 2

sriram-lab/astrix

Using gene expression data to identify regulatory interactions between transcription factors and target genes.

Language: MATLAB - Size: 21.3 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

sriram-lab/met-ptm-drug-cancer

Machine learning to learn metabolite-histone-drug interactions in cancer.

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sriram-lab/MAGENTA

Metabolism And GENomics-based Tailoring of Antibiotic regimens: predicts the impact of pathogen environment on antibiotic potency based on chemogenomic data.

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sriram-lab/bme499

BME499 course materials

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sriram-lab/MetOncoFit

Common biochemical and topological attributes of metabolic genes recurrently dysregulated in tumors.

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sriram-lab/metoncofit-website

A dashboard for the MetOncoFit tumor models.

Language: Python - Size: 126 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1

sriram-lab/single-cell-neutrophil-flux-analysis

Analysis of neutrophil metabolic activity during metastasis using single-cell RNASeq and COnstraint-Based Reconstruction and Analysis.

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sriram-lab/dfa

Fitting time-course metabolomics onto genome-scale metabolic models for inferring metabolic activity.

Language: MATLAB - Size: 5.73 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1

sriram-lab/gemini

Integrating the transcriptional regulatory network with genome-scale metabolic models.

Language: MATLAB - Size: 23.3 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1

sriram-lab/github-tutorials

Another version control resource and tutorial repo

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sriram-lab/docker-tutorials

Another tutorial and resource for using docker to launch web applications

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