sstadick/gzp

Multi-threaded Compression

Language: Rust - Size: 2.59 MB - Last synced: about 2 hours ago - Pushed: about 2 months ago - Stars: 148 - Forks: 14

sstadick/hck

A sharp cut(1) clone.

Language: Rust - Size: 454 KB - Last synced: 25 days ago - Pushed: 27 days ago - Stars: 679 - Forks: 18

sstadick/crabz

Like pigz, but rust

Language: Rust - Size: 2.11 MB - Last synced: 12 days ago - Pushed: about 2 months ago - Stars: 313 - Forks: 13

sstadick/linecount-swift

Language: Swift - Size: 1000 Bytes - Last synced: 25 days ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

sstadick/aoc-lisp-rs

A Lisp to use for Advent of Code, written in Rust

Size: 0 Bytes - Last synced: 25 days ago - Pushed: 4 months ago - Stars: 1 - Forks: 0

sstadick/yoke

POC syntax for typescript bfx workflow thing

Language: TypeScript - Size: 6.84 KB - Last synced: 25 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

sstadick/staged-recipes Fork of conda-forge/staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Size: 57.4 MB - Last synced: 25 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

sstadick/wdl Fork of openwdl/wdl

Workflow Description Language - Specification and Implementations

Size: 3.53 MB - Last synced: 25 days ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

sstadick/vcf-bench Fork of brentp/vcf-bench

evaluating vcf parsing libraries

Size: 22.5 KB - Last synced: 25 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

sstadick/type-info Fork of dflemstr/type-info

Size: 28.3 KB - Last synced: 25 days ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

sstadick/vimconf

Size: 0 Bytes - Last synced: 25 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

sstadick/seq_io Fork of markschl/seq_io

FASTA and FASTQ parsing in Rust

Size: 1.25 MB - Last synced: 25 days ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

sstadick/sproutRE

A small and simple regex engine based off of Thomsons NFA

Size: 0 Bytes - Last synced: 25 days ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

sstadick/translate_transcripts

Language: Python - Size: 14.6 KB - Last synced: 25 days ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

sstadick/SwiftIO

Rust IO, but in Swift

Language: Swift - Size: 20.5 KB - Last synced: 25 days ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

sstadick/varsim

Language: Python - Size: 32.2 KB - Last synced: 25 days ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

sstadick/ScAIList.jl

Scaled Augmented Interval List

Language: Julia - Size: 1.95 KB - Last synced: 25 days ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

sstadick/ripgrep-feedstock Fork of conda-forge/ripgrep-feedstock

A conda-smithy repository for ripgrep.

Language: Batchfile - Size: 90.8 KB - Last synced: 25 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

sstadick/SpeakEasy

An easy to set up Speech to Text system with some basic automation.

Language: Python - Size: 1.8 MB - Last synced: 25 days ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 0

sstadick/rust-htslib Fork of rust-bio/rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

Language: Rust - Size: 6.2 MB - Last synced: 25 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

sstadick/TestLicese

Size: 3.91 KB - Last synced: 25 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

sstadick/ripgrep Fork of BurntSushi/ripgrep

ripgrep recursively searches directories for a regex pattern while respecting your gitignore

Language: Rust - Size: 4.24 MB - Last synced: 25 days ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

sstadick/skeleton

Skeleton python project: https://districtdatalabs.silvrback.com/how-to-develop-quality-python-code

Language: Python - Size: 8.79 KB - Last synced: 25 days ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 0

sstadick/terminal-monochrome

vscode monochrome theme

Size: 1.24 MB - Last synced: 25 days ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1

sstadick/skele-cli Fork of rdegges/skele-cli

A skeleton command line program in Python.

Language: Python - Size: 8.79 KB - Last synced: 25 days ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

sstadick/rpmvenv Fork of kevinconway/rpmvenv

RPM packager for Python virtualenv.

Language: Python - Size: 79.1 KB - Last synced: 25 days ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

sstadick/rust-hashmap-template

Language: Rust - Size: 3.91 KB - Last synced: 25 days ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

sstadick/rust-lapper

Rust implementation of a fast, easy, interval tree library nim-lapper

Language: Rust - Size: 141 KB - Last synced: 25 days ago - Pushed: about 1 month ago - Stars: 50 - Forks: 7

sstadick/PiAUISuite Fork of StevenHickson/PiAUISuite

Raspberry PI AUI Suite

Language: C++ - Size: 4.25 MB - Last synced: 25 days ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 0

sstadick/Registrator.jl Fork of JuliaRegistries/Registrator.jl

Julia package registration bot

Size: 423 KB - Last synced: 25 days ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

sstadick/python-daemon Fork of serverdensity/python-daemon

Python daemonizer for Unix, Linux and OS X

Language: Python - Size: 71.3 KB - Last synced: 25 days ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

sstadick/rextendr Fork of extendr/rextendr

Size: 1.05 MB - Last synced: 25 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

sstadick/radix-sort.cr

Language: Python - Size: 5.86 KB - Last synced: 25 days ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

sstadick/Sequence-Alignment-Notes

Notes on self guided learning around the topic of sequence alignment and it's many variations.

Size: 1000 Bytes - Last synced: 25 days ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

sstadick/rs-tools

misc Rust tools

Language: Rust - Size: 552 KB - Last synced: 25 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

sstadick/nextflow-bug-report Fork of robsyme/nextflow-bug-report

Tiny repository to demonstrate a potential bug in nextflow

Language: Nextflow - Size: 6.84 KB - Last synced: 25 days ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

sstadick/pipebuffer Fork of tfenne/pipebuffer

A command line program for large scale buffering between piped programs

Language: Rust - Size: 13.7 KB - Last synced: 25 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

sstadick/Numerical-Recipes Fork of blackstonep/Numerical-Recipes

All header files from numerical recipes. 3rd Edition.

Size: 172 KB - Last synced: 25 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

sstadick/programming_parallel_computers

Rust and C++ implementations from Programming Parallel Computers

Language: C++ - Size: 1000 Bytes - Last synced: 25 days ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

sstadick/pyr-ivtools

Python wrapper for ivtools

Language: Rust - Size: 484 KB - Last synced: 25 days ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

sstadick/nextflow Fork of nextflow-io/nextflow

A DSL for data-driven computational pipelines

Size: 37.2 MB - Last synced: 25 days ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

sstadick/reflector

A very insecure, hacky version of the watch command to create a webpage.

Language: Perl - Size: 1000 Bytes - Last synced: 25 days ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

sstadick/pygrep

Python 3 implementation of Grep ... or at least a rudementry attempt.

Language: Python - Size: 15.9 MB - Last synced: 25 days ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

sstadick/pandera_bug_report

Language: Python - Size: 11.7 KB - Last synced: 25 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

sstadick/pymax_leven

A short circuiting levenshtein distance package

Size: 0 Bytes - Last synced: 25 days ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

sstadick/ny_lapper

Python wrapper around nim-lapper using nython. Currently just a POC

Language: Nim - Size: 6.84 KB - Last synced: 25 days ago - Pushed: about 4 years ago - Stars: 1 - Forks: 1

sstadick/petal-decomposition Fork of petabi/petal-decomposition

Matrix decomposition algorithms including PCA (principal component analysis) and ICA (independent component analysis)

Size: 85.9 KB - Last synced: 25 days ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

sstadick/nested_intervals Fork of TyberiusPrime/nested_intervals

nested & overlapping interval set functions, overlap, union, etc (Rust)

Size: 38.1 KB - Last synced: 25 days ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

sstadick/noodles Fork of zaeleus/noodles

Bioinformatics I/O libraries in Rust

Language: Rust - Size: 1.76 MB - Last synced: 25 days ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

sstadick/minimal_example_extendr

Language: R - Size: 5.86 KB - Last synced: 25 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

sstadick/personal_medicine_analysis

Language: HTML - Size: 45.9 KB - Last synced: 25 days ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

sstadick/OSSRH-54341

Validate Sonatype account

Size: 0 Bytes - Last synced: 25 days ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

sstadick/locallysourced

A collection of home grown tools for every day little tasks.

Language: Rust - Size: 5.86 KB - Last synced: 25 days ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

sstadick/levenshtein-distance-benchmarks Fork of christianscott/levenshtein-distance-benchmarks

Code for "Making rust as fast as go"

Size: 1.42 MB - Last synced: 25 days ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0

sstadick/mash

Mash files together

Language: Rust - Size: 4.88 KB - Last synced: 25 days ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

sstadick/libdeflater Fork of adamkewley/libdeflater

Rust bindings to libdeflate. 🗜️

Size: 104 KB - Last synced: 25 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

sstadick/lapper.zig

Language: Zig - Size: 17.6 KB - Last synced: 25 days ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

sstadick/kmer-cnt

Rust clones of https://github.com/lh3/kmer-cnt

Language: Rust - Size: 16.6 KB - Last synced: 25 days ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

sstadick/ivtools

Rust lib for genomic interval tools.

Language: Rust - Size: 48.8 KB - Last synced: 25 days ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

sstadick/GenomicModelCreator Fork of Tinyman392/GenomicModelCreator

Builds models based on genomic data. Originally set up for antimicrobial resistance, can be extended to metadata if only genomic data is concerned

Size: 115 KB - Last synced: 25 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

sstadick/genomics-secondary-analysis-using-aws-step-functions-and-aws-batch Fork of awslabs/genomics-secondary-analysis-using-aws-step-functions-and-aws-batch

Size: 549 KB - Last synced: 25 days ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

sstadick/GENESIS Fork of UW-GAC/GENESIS

GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness

Size: 2.78 MB - Last synced: 25 days ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

sstadick/glia Fork of ekg/glia

a string to graph aligner

Language: C++ - Size: 6.94 MB - Last synced: 25 days ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

sstadick/interval_bakeoff

Test tool for different interval libraries

Language: Rust - Size: 11.7 KB - Last synced: 25 days ago - Pushed: over 4 years ago - Stars: 2 - Forks: 0

sstadick/helloextendr Fork of extendr/helloextendr

Minimal Example of the Rust extendr Crate

Size: 61.5 KB - Last synced: 25 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

sstadick/framework Fork of accord-net/framework

Machine learning, computer vision, statistics and general scientific computing for .NET

Size: 408 MB - Last synced: 25 days ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

sstadick/homebrew-hck

Language: Ruby - Size: 13.7 KB - Last synced: 25 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 1

sstadick/fqme Fork of nh13/fqme

Size: 26.4 KB - Last synced: 25 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

sstadick/extendr Fork of extendr/extendr

R extension library for rust designed to be familiar to R users.

Size: 15.7 MB - Last synced: 25 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

sstadick/htsjdk Fork of samtools/htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

Size: 102 MB - Last synced: 25 days ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

sstadick/fastq-rs Fork of aseyboldt/fastq-rs

Language: Rust - Size: 64.5 KB - Last synced: 25 days ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

sstadick/gccontent-benchmark Fork of samuell/gccontent-benchmark

Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)

Language: Rust - Size: 976 KB - Last synced: 25 days ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

sstadick/eztree

Language: Rust - Size: 53.7 KB - Last synced: 25 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

sstadick/awesome-cli-rust Fork of matu3ba/awesome-cli-rust

Size: 25.4 KB - Last synced: 25 days ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

sstadick/homebrew-crabz

Brew formula for crabz

Language: Ruby - Size: 1.95 KB - Last synced: 25 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

sstadick/echtvar Fork of brentp/echtvar

echt rapid variant annotation and filtering

Language: Rust - Size: 299 KB - Last synced: 25 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

sstadick/erg Fork of erg-lang/erg

A Python-compatible statically typed language

Size: 1.09 MB - Last synced: 25 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

sstadick/glommio Fork of DataDog/glommio

Glommio is a thread-per-core framework that aims to make the task of writing highly parallel asynchronous application in a thread-per-core architecture easier for rustaceans

Size: 1.41 MB - Last synced: 25 days ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

sstadick/capsule Fork of puniverse/capsule

Dead-Simple Packaging and Deployment for JVM Apps

Size: 5.93 MB - Last synced: 25 days ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

sstadick/configs Fork of jonhoo/configs

My configuration files

Language: Vim script - Size: 969 KB - Last synced: 25 days ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

sstadick/difm Fork of fmnet/difm

Command line player for AudioAddict network sites.

Language: Python - Size: 24.4 KB - Last synced: 25 days ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

sstadick/dot

data over time

Language: Rust - Size: 4.88 KB - Last synced: 25 days ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0

sstadick/cython_list_test Fork of 00sapo/Python-Complementary-Languages

Just a small test with lists in cython

Language: Python - Size: 51.8 KB - Last synced: 25 days ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

sstadick/ebits

An extended implementation of the BITS algorithm for counting interval intersections

Language: Rust - Size: 5.86 KB - Last synced: 25 days ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

sstadick/d4-format Fork of 38/d4-format

The D4 Quantitative Data Format

Size: 2.68 MB - Last synced: 25 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

sstadick/double

An example of speedy IO in C. Create all combos of words from a list.

Language: C - Size: 12.7 KB - Last synced: 25 days ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

sstadick/cpu-time Fork of tailhook/cpu-time

CPU time measurement library for rust

Language: Rust - Size: 18.6 KB - Last synced: 25 days ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

sstadick/cookiecutter-pypackage-minimal Fork of kragniz/cookiecutter-pypackage-minimal

A minimal template for python packages

Language: Python - Size: 10.7 KB - Last synced: 25 days ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

sstadick/diamond

Language: Rust - Size: 1.95 KB - Last synced: 25 days ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

sstadick/dgranges

D clone of cgranges algorithm.

Language: D - Size: 8.79 KB - Last synced: 25 days ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

sstadick/biofast Fork of lh3/biofast

Benchmarking programming languages/implementations for common tasks in Bioinformatics

Language: C - Size: 105 KB - Last synced: 25 days ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

sstadick/choose Fork of theryangeary/choose

A human-friendly and fast alternative to cut and (sometimes) awk

Size: 90.8 KB - Last synced: 25 days ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

sstadick/awesome-rust Fork of rust-unofficial/awesome-rust

A curated list of Rust code and resources.

Size: 7.06 MB - Last synced: 25 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

sstadick/coitree

Library implementation of https://github.com/dcjones/coitrees

Language: Rust - Size: 11.7 KB - Last synced: 25 days ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

sstadick/cargo-lichking Fork of Nemo157/cargo-lichking

Automated license checking for rust. cargo lichking is a Cargo subcommand that checks licensing information for dependencies.

Size: 309 KB - Last synced: 25 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

sstadick/core_affinity_rs Fork of Elzair/core_affinity_rs

Rust crate for managing CPU core affinities

Size: 28.3 KB - Last synced: 25 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

sstadick/bcl2fastr Fork of amadeusine/bcl2fastr

bcl2fastq faster

Size: 13.1 MB - Last synced: 25 days ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

sstadick/delayed_playback

Language: JavaScript - Size: 2.93 KB - Last synced: 25 days ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

sstadick/cleanse

Small tool to clean up delimited data to make it consumable by standard unix tools

Language: Rust - Size: 34.2 KB - Last synced: 25 days ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

sstadick/aoc-2022

Advent of Code 2022 Solutions in Rust

Language: Rust - Size: 76.2 KB - Last synced: 25 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1