sylvainschmitt | GitHub owners | Ecosyste.ms: Repos

sylvainschmitt/sdmverse

sdmverse is a collaborative metapackage for listing all the metadata of the Species Distribution Modelling (SDM) packages. sdmverse includes a graphical interface available locally or online (see below). sdmverse integrates metadata from SDM packages and checks their validity against the CRAN metadata for perenity.

Language: R - Size: 960 KB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 19 - Forks: 23

sylvainschmitt/troll_eval

Evaluation of TROLL model version 4

Language: TeX - Size: 23.5 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

sylvainschmitt/DownClim

Snakemake and Singularity workflow to Downscale Climate Projections

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sylvainschmitt/treemutation_codes

All code for Schmitt, S., Heuret, P., Troispoux, V., Beraud, M., Cazal, J., Chancerel, É., ... & Tysklind, N. (2024). Low-frequency somatic mutations are heritable in tropical trees Dicorynia guianensis and Sextonia rubra. Proceedings of the National Academy of Sciences, 121(10), e2313312121.

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sylvainschmitt/ideas

My participation into the IDEAS project. The aim is to build climate indices related to land use change in Guaviare.

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sylvainschmitt/SSDM

Stacked Species Distribution Modelling R package

Language: HTML - Size: 5.37 MB - Last synced: about 1 month ago - Pushed: 7 months ago - Stars: 40 - Forks: 17

sylvainschmitt/detectMutations

singularity & snakemake workflow to detect mutations with several tools to detect mutations

Language: Python - Size: 3.57 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

sylvainschmitt/handbook

This is a personal handbook test for all my activity as a researcher at CIRAD.

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sylvainschmitt/regeneration

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sylvainschmitt/getEra

Get climatic data from ERA5-Land on CDS using python cdsapi

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sylvainschmitt/getCordex

Get projection data from CORDEX

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sylvainschmitt/singularity-troll

TROLL and associated R packages Singularity container

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sylvainschmitt/rcontroll

Package for individual-based forest growth simulator TROLL

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sylvainschmitt/singularity-cdsapi

Singularity image for Python API to access the Copernicus Climate Data Store (CDS)

Language: Singularity - Size: 9.77 KB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 0 - Forks: 0

sylvainschmitt/treegrowth

Variation in the growth potential of individual trees at the Paracou research station

Language: Stan - Size: 145 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 3 - Forks: 1

sylvainschmitt/treemutation

Mutation in the tropical tree canopy

Language: TeX - Size: 78.1 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

sylvainschmitt/genomeAnnotation

singularity & snakemake workflow to annotate genomes.

Language: Python - Size: 88.9 KB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 0 - Forks: 0

sylvainschmitt/hydroITV

Hydraulic trait inter- versus intra-specific local variability.

Language: TeX - Size: 137 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 1

sylvainschmitt/trollExp

singularity & snakemake workflow to run a TROLL experiment.

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sylvainschmitt/datatrollr

datatrollr integrates input and evaluation data for the use of rcontroll with TROLL V4 (water module).

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sylvainschmitt/singularity-LoggingLab

R and LoggingLab package

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sylvainschmitt/treespeciesDescriptors

Repository to develop descriptors of the environment and performance of tropical tree species in Paracou for the Camille and Sebastien analyses.

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sylvainschmitt/inferGrowth

`singularity` & `snakemake workflow to infer growth from Guyafor data.

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sylvainschmitt/singularity-r-bayesian

R and bayesian packages Singularity container

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sylvainschmitt/genologin_bug_minimal_example 📦

The aim of this repository is to provide a minimal example to a bug encountered on [genologin](http://bioinfo.genotoul.fr/).

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sylvainschmitt/tarchetypes Fork of ropensci/tarchetypes

Archetypes for targets and pipelines

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sylvainschmitt/generateMutations

singularity & snakemake workflow to generate in silico mutations.

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sylvainschmitt/transcriptoAechmea

singularity & snakemake workflow for trancriptomic analyses of Aechmea species.

Language: Python - Size: 3.24 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

sylvainschmitt/TROLL Fork of EcoFoG/TROLL

Repository for TROLL sylviculture model development and use

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sylvainschmitt/CrossReferenceR

Contain an RStudio addin to insert cross references in bookdown documents with a minimal user interface.

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sylvainschmitt/master-thesis

Online version of my master thesis

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sylvainschmitt/master-thesis-inp-template

This is the template developped for master 2 student of the FOREN lab at INP-HB, Yamoussoukro, Ivory Coast.

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sylvainschmitt/singularity-r-bioinfo

R and bioinformatic packages Singularity container

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sylvainschmitt/GOING

Genomics of Individual Growth in tropical tree species Symphonia globulifera

Language: R - Size: 26.6 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 1

sylvainschmitt/mangrove

Mangrove explanatory analyses.

Language: Stan - Size: 17.9 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

sylvainschmitt/PhD

Personnal repository for my PhD code and documentation.

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sylvainschmitt/website

My personal webpage

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sylvainschmitt/Uppangala

Uppangala tree functionnal traits analysis

Language: R - Size: 2.77 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 3

sylvainschmitt/sylvainschmitt

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sylvainschmitt/postdocs

Repository to develop postdocs projects and opportunities.

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sylvainschmitt/LoggingLab Fork of VincyaneBadouard/LoggingLab

Logging simulator

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sylvainschmitt/My_cours Fork of VincyaneBadouard/My_courses

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sylvainschmitt/snakemakeLecture

Snakemake and Singularity lecture at UMR ECOFOG

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sylvainschmitt/transcriptonia

Transcriptomics of Symphonia globulifera

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sylvainschmitt/datadrivencv Fork of nstrayer/datadrivencv

R package for building customizable CVs from spreadsheets

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sylvainschmitt/singularity-octopus

octopus Singularity container

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sylvainschmitt/singularity-template

template for Singularity container

Language: Singularity - Size: 83 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

sylvainschmitt/snakemake_singularity

snakemake and singularity training for future genome assembly

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sylvainschmitt/ecoevosimulator

Simulating eco-evolutionnary dynamics of virtual populations with topography and forest gap dynamics.

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sylvainschmitt/Pain

Shiny App for Mikael's bread

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sylvainschmitt/simsympho Fork of dschwilk/ms-data-Oikos-2002

Quick exploration of reusing the model from Schwilt and Kerr (2002) to model the eco-evolutionnary dynamics of *Symphonia globulifera*

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sylvainschmitt/symphostage Fork of EmiDt/symphostage

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GitHub / sylvainschmitt 7 repositories