tanaylab/Metacells.jl

Single-cell scRNA Analysis

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tanaylab/misha.ext

A home for some function that extend the `misha` package.

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tanaylab/Daf.py

Data in Axes in Formats

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tanaylab/Daf.jl

Data in Axes in Formats

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tanaylab/tglkmeans

Efficient Implementation of Kmeans++ Algorithm

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tanaylab/WiserTester

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tanaylab/MCGraphs.jl

Generate graphs for visualizing scRNA-seq metacells data in a Daf data set.

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tanaylab/naryn

Native Access medical record Retriever for high Yield aNalytics

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tanaylab/MCView

A shiny app for metacell analysis

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tanaylab/metacells

Metacells - Single-cell RNA Sequencing Analysis

Language: Python - Size: 31.6 MB - Last synced: 19 days ago - Pushed: about 2 months ago - Stars: 80 - Forks: 8

tanaylab/mcATAC

Metacell analysis for ATAC data

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tanaylab/mldpEHR

Markovian Lifelong Mortality and Disease Predisposition models for electronic health records.

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tanaylab/metacell

Metacell - Single-cell mRNA Analysis

Language: R - Size: 24.3 MB - Last synced: 3 months ago - Pushed: 7 months ago - Stars: 98 - Forks: 27

tanaylab/BarboyBercovich

Pipeline and analysis of CD8+ Tcells timed response to immunotherapy in mouse models

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tanaylab/metacell.flow

Supporting inference of differentiation flow over metacell manifolds (and innovation of additional scRNA buzzwords)

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tanaylab/Mendelson_et_al_2023

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tanaylab/metacells-vignettes

Vignettes for the Python metacells package

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tanaylab/tgstat

Fast and efficient statistical tools from the Tanay lab

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tanaylab/tgppt

Tanay Group Powerpoint Utils

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tanaylab/NestedTests.jl

Run tests in nested evironments.

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tanaylab/mtecs_multiome

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tanaylab/rabembflow

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tanaylab/gpatterns

Language: R - Size: 596 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

tanaylab/tgutil

Tanay group collection of simple utility functions

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tanaylab/metabric_rrbs

Language: Jupyter Notebook - Size: 48.2 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 4 - Forks: 1

tanaylab/methylayer

Tumor Expression-Methylation Layerd Analysis

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tanaylab/labNorm

Normalize Laboratory Measurements by Age and Gender

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tanaylab/repsc 📦

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tanaylab/IIAS2023

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tanaylab/hematopoiesis2018

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tanaylab/Dnmt3ab_MEEB

Language: Jupyter Notebook - Size: 49.1 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

tanaylab/MARS-SEQ

MARS-SEQ pipeline (scrna module from tlsrc)

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tanaylab/embflow

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tanaylab/misha

Genomic data analysis suite

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tanaylab/schic2

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tanaylab/tet-gastrulation

TET gastrulation paper analysis code

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tanaylab/EmbExe

EXE development paper analysis code

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tanaylab/sc5mc

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tanaylab/cppd

PBAT capture probe designer package

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tanaylab/chameleon

Automatic colors for multi-dimensional data

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tanaylab/mcbrowse

Metacells Browsing

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tanaylab/shaman

The shaman package - sampling HiC contact matrices for a-parametric normalization

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tanaylab/li_et_al_cell_2018_melanoma_scrna

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tanaylab/slanter

Slanted Matrices and Ordered Clustering

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tanaylab/umi4cpackage

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tanaylab/jupyter-shiny-proxy Fork of ryanlovett/jupyter-shiny-proxy

Jupyter extension for proxying shiny server

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tanaylab/Meir_et_al_nat_plants_2021_SMT

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tanaylab/tgconfig

The goal of tgconfig is to provide infrastructure for managing package parameters, (inspired by https://github.com/r-lib/pkgconfig)

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tanaylab/netta-celk Fork of deviantony/docker-elk

The Elastic stack (ELK) powered by Docker and Compose.

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tanaylab/gpwm

Motif analysis using the Misha package

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tanaylab/tanaylab.github.io

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tanaylab/Meir_et_al_nat_gen_2020_clonemem

Luria-Delbruck design, comparing transcriptome, methylome and exome of single-cells to hundreds of single-cell-derived clones

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tanaylab/repguide

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tanaylab/tomato_SMT

Temporal dissection of tomato shoot apical single-meristem-transcriptomes during transition to flowering

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tanaylab/scikit-learn Fork of scikit-learn/scikit-learn

scikit-learn: machine learning in Python

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tanaylab/bissli2

Map Bisulfite Converted Reads

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tanaylab/reputils

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tanaylab/brocks_et_al_nat_com_2019_epitherapy_scrna

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