tanghaibao/dna-pygments 📦

Javascript code to highlight features in biological sequences

Language: JavaScript - Size: 109 KB - Last synced: about 23 hours ago - Pushed: almost 14 years ago - Stars: 5 - Forks: 0

tanghaibao/trimReads

Utility programs to trim or sort Illumina reads with adapter sequences

Language: C++ - Size: 1.71 MB - Last synced: about 23 hours ago - Pushed: almost 11 years ago - Stars: 15 - Forks: 1

tanghaibao/jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

Language: Python - Size: 9.35 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 692 - Forks: 179

tanghaibao/goatools

Python library to handle Gene Ontology (GO) terms

Language: Python - Size: 57.5 MB - Last synced: about 23 hours ago - Pushed: 20 days ago - Stars: 727 - Forks: 209

tanghaibao/bio-pipeline

My collection of light bioinformatics analysis pipelines for specific tasks

Language: C - Size: 4.01 MB - Last synced: about 23 hours ago - Pushed: almost 4 years ago - Stars: 69 - Forks: 33

tanghaibao/treecut

Find nodes in hierarchical clustering that are statistically significant

Language: Python - Size: 527 KB - Last synced: 23 days ago - Pushed: over 6 years ago - Stars: 28 - Forks: 10

tanghaibao/quota-alignment

Guided synteny alignment between duplicated genomes (within specified quota constraint)

Language: Python - Size: 2.96 MB - Last synced: about 23 hours ago - Pushed: over 6 years ago - Stars: 54 - Forks: 21

tanghaibao/allhic

Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

Language: Jupyter Notebook - Size: 28.6 MB - Last synced: 6 months ago - Pushed: almost 3 years ago - Stars: 56 - Forks: 11

tanghaibao/positional-history 📦

Internal scripts to run the pipeline to determine the transpositions of A. thaliana genes with respect to multiple outgroups

Language: Python - Size: 113 KB - Last synced: about 23 hours ago - Pushed: over 13 years ago - Stars: 5 - Forks: 0

tanghaibao/mcscan 📦

Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format

Language: C++ - Size: 27.9 MB - Last synced: 6 months ago - Pushed: over 13 years ago - Stars: 21 - Forks: 12

tanghaibao/nannou-playground

Animation projects that leverage the excellent nannou library

Language: Rust - Size: 7.17 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 2 - Forks: 0

tanghaibao/rust-wfa2

Rust binding for WFA2-lib

Language: Rust - Size: 30.3 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 6 - Forks: 4

tanghaibao/dotfiles

bashrc, vimrc, gitconfig and various other configuration files

Language: C++ - Size: 541 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 5 - Forks: 1

tanghaibao/jcvi-bin

Collection of third-party softwares used in jcvi library

Language: Java - Size: 15.7 MB - Last synced: about 1 year ago - Pushed: almost 8 years ago - Stars: 6 - Forks: 7

tanghaibao/pgdd 📦

Dynamic contents within the plant genome duplication database

Language: Python - Size: 1.8 MB - Last synced: about 1 year ago - Pushed: over 13 years ago - Stars: 5 - Forks: 0

tanghaibao/Splithunter

Identify split reads in given chromosomal regions

Language: C++ - Size: 32.6 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 6 - Forks: 1

tanghaibao/pybind11_log

A bridge from C++ to Python logging

Language: C++ - Size: 75.2 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 4 - Forks: 0

tanghaibao/tanghaibao

Size: 1.95 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0