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GitHub / teyden 36 repositories
I like to apply molecular biology knowledge to develop software for managing biological and medical data.
teyden/variant-store Fork of phenotips/variant-store
A Java library that wraps the complexity of storing and querying large numbers of genomic variants
Language: Java - Size: 14 MB - Last synced: 9 months ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0
teyden/webmain Fork of rootmeansquare/webmain
Language: HTML - Size: 9.98 MB - Last synced: 9 months ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0
teyden/textAnalysis
Text filtering and curation in Ruby
Language: HTML - Size: 1.51 MB - Last synced: 9 months ago - Pushed: about 9 years ago - Stars: 2 - Forks: 0
teyden/relation-extraction Fork of crea-berkeley/relation-extraction
Extracts relations from text.
Language: Scala - Size: 147 MB - Last synced: 9 months ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0
teyden/teyden.github.io
Language: JavaScript - Size: 162 MB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
teyden/teyden.me
Language: JavaScript - Size: 1.15 MB - Last synced: 9 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
teyden/phenotips Fork of phenotips/phenotips
PhenoTips provides an easy-to-use Web interface and standardized database back-end for collecting clinical findings observed in patients with possible genetic disorders.
Language: Java - Size: 1.31 GB - Last synced: 9 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0
teyden/udp-neuroimaging
Custom neuroradiology section for the PT patient form, with conditions divided into sections. Row for each condition, column for each visit date. Rows map to HPO terms.
Language: Java - Size: 370 KB - Last synced: 9 months ago - Pushed: over 7 years ago - Stars: 1 - Forks: 0
teyden/neuroModelling
Computational neural modelling in MATLAB
Language: Matlab - Size: 3.23 MB - Last synced: 9 months ago - Pushed: over 9 years ago - Stars: 1 - Forks: 0
teyden/strings
Python 101: string commands
Language: Python - Size: 125 KB - Last synced: 9 months ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0
teyden/sparseDOSSA_x Fork of biobakery/sparseDOSSA
Size: 638 KB - Last synced: 9 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0
teyden/MiRKC Fork of cran/MiRKAT
This is a fork of MiRKAT — Microbiome Regression-Based Kernel Association Test.
Language: R - Size: 289 KB - Last synced: 9 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
teyden/phenotips-niaid Fork of Gene42/phenotips-niaid
Language: Shell - Size: 779 MB - Last synced: 9 months ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 0
teyden/pyHSICLasso Fork of riken-aip/pyHSICLasso
Versatile Nonlinear Feature Selection Algorithm for High-dimensional Data
Language: Python - Size: 8.11 MB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
teyden/llist
Python 101: linked lists
Language: Python - Size: 4.88 KB - Last synced: 9 months ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0
teyden/miscellaneous
School stuff and coder challenges
Language: Python - Size: 1.95 KB - Last synced: 9 months ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 0
teyden/cs246-OOS
Winter 2015 | bash & c++
Language: C++ - Size: 133 KB - Last synced: 9 months ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0
teyden/DNAwebapp_old
>> contents moved to bioinf / DNAwebapp
Language: HTML - Size: 12.7 MB - Last synced: 9 months ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0
teyden/crea-anatomy-tree-builder Fork of crea-berkeley/crea-anatomy-tree-builder
Language: Java - Size: 496 KB - Last synced: 9 months ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0
teyden/hfe Fork of HenschelLab/HierarchicalFeatureEngineering
Hierarchical Feature Engineering for Microbiota (16S rRNA profiles), as provided by OTU tables of relative abundances.
Language: Python - Size: 3.47 MB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
teyden/crea-relation-filterer Fork of tuzhucheng/crea-relation-filterer
A filtering tool for relations extracted from NLP
Language: HTML - Size: 1.44 MB - Last synced: 9 months ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0
teyden/experimental-biology-2015 Fork of crea-berkeley/experimental-biology-2015
Submission for the experimental biology conference in Boston.
Language: TeX - Size: 13.2 MB - Last synced: 9 months ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0
teyden/CVST Fork of cran/CVST
:exclamation: This is a read-only mirror of the CRAN R package repository. CVST — Fast Cross-Validation via Sequential Testing
Language: R - Size: 29.3 KB - Last synced: 9 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0
teyden/CREA-Web-App Fork of crea-waterloo/bionavist
Interactive visualization for relations extracted by NLP of biological article abstracts found on PubMed.
Language: HTML - Size: 320 KB - Last synced: 9 months ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0
teyden/api-example-express Fork of 23andMe/api-example-express
A Node.js/Express app built on 23andMe's API, checking an ACVR1B mutation for higher muscle strength.
Language: JavaScript - Size: 202 KB - Last synced: 9 months ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0
teyden/chic
Commercial Website
Language: Python - Size: 17.1 MB - Last synced: 9 months ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0
teyden/catalogapp
Language: Python - Size: 262 KB - Last synced: 9 months ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 0
teyden/bioinf
DNAwebapp + sequence & SNP analysis
Language: Python - Size: 12.7 MB - Last synced: 9 months ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0
teyden/asthma-research
Language: C++ - Size: 572 MB - Last synced: 9 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0
teyden/23andme Fork of guo-yu/23andme
a api wrapper of api.23andme.com
Size: 121 KB - Last synced: 9 months ago - Pushed: almost 10 years ago - Stars: 0 - Forks: 0
teyden/api-example-flask Fork of 23andMe/api-example-flask
An example Python app on 23andMe's genome API using the flask microframework.
Language: Python - Size: 226 KB - Last synced: 9 months ago - Pushed: over 10 years ago - Stars: 0 - Forks: 0
teyden/artsfordementia
dementiaHack Toronto 2017
Language: Python - Size: 19.3 MB - Last synced: 9 months ago - Pushed: about 7 years ago - Stars: 1 - Forks: 1
teyden/genome-plots
Plotting tools + SNP analysis module of .VCF files, 23andme raw data, ideograms, and more.
Language: Python - Size: 2.25 MB - Last synced: 9 months ago - Pushed: over 8 years ago - Stars: 1 - Forks: 0
teyden/sciPlots
Plotting tools for epidemiological and enzyme kinetic modeling using ode solver and Plot.ly
Language: Python - Size: 1.09 MB - Last synced: 9 months ago - Pushed: over 8 years ago - Stars: 1 - Forks: 1
teyden/hodgkin-huxley
python + MATLAB: HH model of action potential
Language: Python - Size: 121 KB - Last synced: 9 months ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0
teyden/neural-spiking
i.e. Izhikevich Model + more (MATLAB)
Size: 129 KB - Last synced: 9 months ago - Pushed: almost 10 years ago - Stars: 0 - Forks: 1