thomasbtf/nextjs-dashboard

Language: TypeScript - Size: 975 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

thomasbtf/rl_bin_packing

Packing bins with reinforcement learning

Language: Python - Size: 9.77 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

thomasbtf/sars-dashboard

Dashboard to browse analyses created by UnCoVar.

Language: CSS - Size: 4.05 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

thomasbtf/portsel

Language: Makefile - Size: 313 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

thomasbtf/document-anonymization

Personal data redaction on images based on FHIR patient resources.

Language: Python - Size: 4.1 MB - Last synced: 11 months ago - Pushed: almost 3 years ago - Stars: 4 - Forks: 0

thomasbtf/snakesite

Interactive execution of Snakemake workflows via a web interface.

Language: Python - Size: 224 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 4 - Forks: 1

thomasbtf/cat-feeder

Language: C - Size: 1.38 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

thomasbtf/hello_rust

Language: HTML - Size: 12.6 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

thomasbtf/etc

Code snippets, cheatsheets and other stuff

Language: Python - Size: 2.38 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

thomasbtf/snakemake-wrappers Fork of snakemake/snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

Language: Python - Size: 148 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

thomasbtf/ncov2019-artic-nf Fork of connor-lab/ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

Language: Nextflow - Size: 96.4 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

thomasbtf/artic-ncov2019 Fork of artic-network/artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

Language: Python - Size: 9.43 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

thomasbtf/V-pipe Fork of cbg-ethz/V-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Size: 10.7 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

thomasbtf/rust-bio-tools Fork of rust-bio/rust-bio-tools

A set of command line utilities based on Rust-Bio.

Size: 4.35 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

thomasbtf/snakelines Fork of jbudis/snakelines

Computational pipelines for processing of paired-end Illumina reads

Size: 236 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

thomasbtf/nextclade Fork of nextstrain/nextclade

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Language: C++ - Size: 28.4 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

thomasbtf/cookiecutter-snakemake-workflow Fork of snakemake-workflows/cookiecutter-snakemake-workflow

A cookiecutter template for Snakemake workflows

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thomasbtf/mkdocs Fork of mkdocs/mkdocs

Project documentation with Markdown.

Size: 28.8 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

thomasbtf/sars-cov-2-wbe

Quantifying SARS-CoV-2 lineage abundances in wastewater.

Language: HTML - Size: 834 KB - Last synced: 5 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

thomasbtf/snakemake Fork of snakemake/snakemake

This is the development home of the workflow management system Snakemake. For general information, see

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thomasbtf/uncovar Fork of IKIM-Essen/uncovar

Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.

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thomasbtf/peppy-feedstock Fork of conda-forge/peppy-feedstock

A conda-smithy repository for peppy.

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thomasbtf/snakemake-workflow-catalog Fork of snakemake/snakemake-workflow-catalog

A statically generated catalog of available Snakemake workflows

Size: 80.3 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

thomasbtf/finance

Size: 1.95 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

thomasbtf/small-kraken-db

Size: 78.1 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

thomasbtf/snakemake-github-action Fork of snakemake/snakemake-github-action

A Github action for running a Snakemake workflow

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thomasbtf/OSD

Language: Jupyter Notebook - Size: 160 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 3 - Forks: 0

thomasbtf/release-please-action Fork of google-github-actions/release-please-action

automated releases based on conventional commits

Size: 12 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

thomasbtf/rna-seq-star-deseq2 Fork of snakemake-workflows/rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

Size: 16.5 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

thomasbtf/project-mow

Language: Python - Size: 59.6 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

thomasbtf/hello-django

Language: Python - Size: 952 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

thomasbtf/test

Size: 3.91 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

thomasbtf/hello-diamond

Language: Python - Size: 19.6 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

thomasbtf/hello-github-actions

Size: 4.88 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

thomasbtf/hello-snakemake

Language: HTML - Size: 14.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

thomasbtf/bioconda-recipes Fork of bioconda/bioconda-recipes

Conda recipes for the bioconda channel.

Size: 330 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

thomasbtf/snakemake-workflow-book-popularity

Language: Python - Size: 31.3 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

thomasbtf/vanilla-SVM

Implementation of a Support Vector Machine without the aid of external libraries

Language: Jupyter Notebook - Size: 1.14 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

thomasbtf/library-book-prediction

Language: Python - Size: 6.84 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0