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GitHub / timholy 64 repositories
Neuroscientist and developer of the Julia language and its packages, including many developer tools and those of the @JuliaImages organization
timholy/MIToS.jl Fork of diegozea/MIToS.jl
Mutual Information Tools for protein Sequence analysis in Julia
Size: 38.9 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 0 - Forks: 0
timholy/Revise.jl
Automatically update function definitions in a running Julia session
Language: Julia - Size: 4.37 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 1,159 - Forks: 106
timholy/FlameGraphs.jl
Analysis of profiling data using trees
Language: Julia - Size: 701 KB - Last synced: 4 days ago - Pushed: 6 days ago - Stars: 51 - Forks: 12
timholy/MethodAnalysis.jl
Utilities to analyze Julia's method tables
Language: Julia - Size: 469 KB - Last synced: 4 days ago - Pushed: about 1 month ago - Stars: 93 - Forks: 3
timholy/PkgCacheInspector.jl
Inspect the contents of Julia package cache files
Language: Julia - Size: 229 KB - Last synced: 4 days ago - Pushed: 5 days ago - Stars: 38 - Forks: 6
timholy/PositiveFactorizations.jl
Positive-definite "approximations" to matrices
Language: Julia - Size: 32.2 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 35 - Forks: 12
timholy/ProfileView.jl
Visualization of Julia profiling data
Language: Julia - Size: 613 KB - Last synced: 4 days ago - Pushed: 4 months ago - Stars: 339 - Forks: 41
timholy/NLPModels.jl Fork of JuliaSmoothOptimizers/NLPModels.jl
Data Structures for Optimization Models
Size: 1.06 MB - Last synced: 2 days ago - Pushed: 12 days ago - Stars: 0 - Forks: 0
timholy/ProgressMeter.jl
Progress meter for long-running computations
Language: Julia - Size: 300 KB - Last synced: 4 days ago - Pushed: 6 days ago - Stars: 657 - Forks: 89
timholy/AbstractDifferentiation.jl Fork of JuliaDiff/AbstractDifferentiation.jl
An abstract interface for automatic differentiation.
Size: 105 KB - Last synced: 3 days ago - Pushed: 19 days ago - Stars: 0 - Forks: 0
timholy/AdvancedScientificComputing
A short course on Julia and open-source software development
Language: Jupyter Notebook - Size: 12.7 MB - Last synced: 4 days ago - Pushed: about 1 year ago - Stars: 293 - Forks: 36
timholy/HalideCall.jl
Use shared libraries created by Halide from Julia
Language: Julia - Size: 6.84 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 8 - Forks: 3
timholy/SnoopCompile.jl
Making packages work faster with more extensive precompilation
Language: Julia - Size: 5.92 MB - Last synced: 4 days ago - Pushed: 24 days ago - Stars: 297 - Forks: 45
timholy/ANTsRegistration.jl
Convenience wrapper for image registration using the Advanced Normalization Tools
Language: Julia - Size: 38.1 KB - Last synced: 4 days ago - Pushed: about 3 years ago - Stars: 11 - Forks: 7
timholy/CodeTracking.jl
It's editing-time, do you know where your methods are?
Language: Julia - Size: 158 KB - Last synced: 4 days ago - Pushed: 3 months ago - Stars: 130 - Forks: 9
timholy/Cpp.jl
Utilities for calling C++ from Julia
Language: Julia - Size: 14.6 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 47 - Forks: 13
timholy/ComputationalResources.jl
Julia package for selecting hardware, libraries, and algorithms for a computation
Language: Julia - Size: 21.5 KB - Last synced: 1 day ago - Pushed: over 3 years ago - Stars: 34 - Forks: 5
timholy/Grid.jl 📦
Interpolation and related operations on grids
Language: Julia - Size: 188 KB - Last synced: 4 days ago - Pushed: over 4 years ago - Stars: 47 - Forks: 26
timholy/QuadDIRECT.jl
Global optimization without derivatives
Language: Julia - Size: 323 KB - Last synced: 4 days ago - Pushed: about 2 years ago - Stars: 49 - Forks: 7
timholy/PDMats.jl Fork of JuliaStats/PDMats.jl
Uniform Interface for positive definite matrices of various structures
Size: 329 KB - Last synced: 4 days ago - Pushed: 3 months ago - Stars: 0 - Forks: 0
timholy/JuliaCon2022_Precompilation
Presentation for JuliaCon 2022 on precompilation
Language: Julia - Size: 121 KB - Last synced: 4 days ago - Pushed: 9 months ago - Stars: 15 - Forks: 1
timholy/AggregateBy.jl
Aggregate collections by keys
Language: Julia - Size: 135 KB - Last synced: 4 days ago - Pushed: about 1 month ago - Stars: 11 - Forks: 0
timholy/Distributions.jl Fork of JuliaStats/Distributions.jl
A Julia package for probability distributions and associated functions.
Size: 3.95 MB - Last synced: 4 days ago - Pushed: 4 months ago - Stars: 0 - Forks: 0
timholy/CovarianceEstimation.jl Fork of mateuszbaran/CovarianceEstimation.jl
Lightweight robust covariance estimation in Julia
Size: 1.49 MB - Last synced: 4 days ago - Pushed: 4 months ago - Stars: 1 - Forks: 0
timholy/ExpectationMaximization.jl Fork of dmetivie/ExpectationMaximization.jl
A simple but generic implementation of Expectation Maximization algorithms to fit mixture models.
Size: 349 KB - Last synced: 4 days ago - Pushed: 5 months ago - Stars: 0 - Forks: 0
timholy/ImagineFormat.jl
Read .imagine files in Julia
Language: Julia - Size: 72.3 KB - Last synced: 4 days ago - Pushed: 6 months ago - Stars: 1 - Forks: 8
timholy/MzXML.jl
Load mass spectrometry mzXML files
Language: Julia - Size: 77.1 KB - Last synced: 4 days ago - Pushed: almost 2 years ago - Stars: 16 - Forks: 6
timholy/ThickNumbers.jl
Abstract type and utility functions for numbers that also act like sets/intervals
Language: Julia - Size: 85.9 KB - Last synced: 4 days ago - Pushed: 7 months ago - Stars: 5 - Forks: 0
timholy/Evolutionary.jl Fork of wildart/Evolutionary.jl
Evolutionary & genetic algorithms for Julia
Size: 634 KB - Last synced: 4 days ago - Pushed: 12 months ago - Stars: 0 - Forks: 0
timholy/SaferIntegers.jl Fork of JeffreySarnoff/SaferIntegers.jl
These integer types use checked arithmetic, otherwise they are as system types.
Language: Julia - Size: 840 KB - Last synced: 4 days ago - Pushed: 9 months ago - Stars: 1 - Forks: 0
timholy/MultilevelCoordinateSearch.jl
Global optimization without derivatives
Language: Julia - Size: 11.7 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 11 - Forks: 2
timholy/MzCore.jl
Traits and low-level utilities for mass spectrometry
Language: Julia - Size: 146 KB - Last synced: 2 days ago - Pushed: over 3 years ago - Stars: 5 - Forks: 1
timholy/MzPlots.jl
Plotting utilities for mass spectrometry data
Language: Julia - Size: 25.4 KB - Last synced: 4 days ago - Pushed: about 3 years ago - Stars: 9 - Forks: 1
timholy/IntervalArithmetic.jl Fork of JuliaIntervals/IntervalArithmetic.jl
Rigorous floating-point calculations using interval arithmetic in Julia
Language: Julia - Size: 3.19 MB - Last synced: 4 days ago - Pushed: 8 months ago - Stars: 0 - Forks: 0
timholy/Aqua.jl Fork of JuliaTesting/Aqua.jl
Auto QUality Assurance for Julia packages
Size: 146 KB - Last synced: 4 days ago - Pushed: 6 months ago - Stars: 0 - Forks: 0
timholy/CallGraphs.jl
Analysis of source callgraphs for julia
Language: Julia - Size: 40 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 7 - Forks: 2
timholy/AssignGroups.jl
Assign students to collaborative groups
Language: Julia - Size: 36.1 KB - Last synced: 4 days ago - Pushed: 5 months ago - Stars: 1 - Forks: 0
timholy/Ratios.jl
Faster Rational-like types for Julia
Language: Julia - Size: 50.8 KB - Last synced: 4 days ago - Pushed: about 1 month ago - Stars: 24 - Forks: 13
timholy/Rebugger.jl
An expression-level debugger for Julia with a provocative command-line (REPL) user interface
Language: Julia - Size: 1.02 MB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 171 - Forks: 18
timholy/JuliaRegistryAnalysis.jl Fork of KristofferC/JuliaRegistryAnalysis.jl
Size: 5.86 KB - Last synced: 4 days ago - Pushed: 10 months ago - Stars: 0 - Forks: 0
timholy/VariationalOnlineStats.jl
Online estimate of the median by variational/Bayesian methods
Language: Julia - Size: 18.6 KB - Last synced: 4 days ago - Pushed: 11 months ago - Stars: 0 - Forks: 2
timholy/IProfile.jl
Profilers for Julia
Language: Julia - Size: 64.5 KB - Last synced: 4 days ago - Pushed: about 2 years ago - Stars: 18 - Forks: 15
timholy/AxisAlgorithms.jl
Efficient filtering and linear algebra routines for multidimensional arrays
Language: Julia - Size: 37.1 KB - Last synced: 1 day ago - Pushed: 5 months ago - Stars: 9 - Forks: 5
timholy/DataFrames.jl Fork of JuliaData/DataFrames.jl
In-memory tabular data in Julia
Size: 12.1 MB - Last synced: 4 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
timholy/CSV.jl Fork of JuliaData/CSV.jl
Utility library for working with CSV and other delimited files in the Julia programming language
Size: 9.57 MB - Last synced: 4 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
timholy/ZMQ.jl Fork of JuliaInterop/ZMQ.jl
Julia interface to ZMQ
Size: 225 KB - Last synced: 4 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
timholy/RoMEPlotting.jl Fork of JuliaRobotics/RoMEPlotting.jl
2D plotting functionality for the RoME.jl package
Size: 420 KB - Last synced: 4 days ago - Pushed: 10 months ago - Stars: 0 - Forks: 0
timholy/GtkObservables.jl Fork of JuliaGizmos/GtkObservables.jl
Combine Gtk.jl and Observables.jl for easier GUI development
Size: 1.04 MB - Last synced: 4 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
timholy/PkgImages.jl 📦
Prototypes for next-generation package caches in Julia
Language: Julia - Size: 16.6 KB - Last synced: 4 days ago - Pushed: over 1 year ago - Stars: 19 - Forks: 0
timholy/ScheduleMeetings.jl
Language: Julia - Size: 106 KB - Last synced: 4 days ago - Pushed: 6 months ago - Stars: 9 - Forks: 0
timholy/RestrictProlong.jl
Efficient multigrid operators for Julia
Language: Julia - Size: 14.6 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 7 - Forks: 3
timholy/SymbolicLP.jl
Symbolic linear programming and linear constraints
Language: Julia - Size: 14.6 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 5 - Forks: 2
timholy/JuliaSyntax.jl Fork of JuliaLang/JuliaSyntax.jl
A Julia frontend, written in Julia
Size: 1.41 MB - Last synced: 4 days ago - Pushed: 9 months ago - Stars: 0 - Forks: 0
timholy/AffineTransforms.jl 📦
Computational geometry with affine transformations
Language: Julia - Size: 41 KB - Last synced: 4 days ago - Pushed: over 6 years ago - Stars: 19 - Forks: 6
timholy/FastAnonymous.jl 📦
Fast "anonymous functions" for Julia
Language: HTML - Size: 73.2 KB - Last synced: 4 days ago - Pushed: over 4 years ago - Stars: 30 - Forks: 9
timholy/ArrayViewsAPL.jl 📦
Generic array-view type with APL indexing semantics
Language: Julia - Size: 285 KB - Last synced: 4 days ago - Pushed: over 4 years ago - Stars: 2 - Forks: 1
timholy/Cartesian.jl 📦
Fast multidimensional algorithms
Language: Julia - Size: 353 KB - Last synced: 4 days ago - Pushed: over 4 years ago - Stars: 18 - Forks: 8
timholy/VTK.jl 📦
Proof of concept VTK bindings for the Julia language
Language: Julia - Size: 1.34 MB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 5 - Forks: 1
timholy/SentinelArrays.jl Fork of JuliaData/SentinelArrays.jl
Array types that can use sentinel values of the element type for special values
Language: Julia - Size: 156 KB - Last synced: 4 days ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0
timholy/BasicBlockRewriter.jl
Code-regrouping to reduce latency in Julia code compilation
Language: Julia - Size: 104 KB - Last synced: 4 days ago - Pushed: about 2 years ago - Stars: 15 - Forks: 0
timholy/DelimitedFiles.jl Fork of JuliaData/DelimitedFiles.jl
A package for reading and writing files with delimited values (Originally a Julia stdlib)
Size: 95.7 KB - Last synced: 4 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
timholy/CommonSubexpressions.jl Fork of rdeits/CommonSubexpressions.jl
Naïve combined subexpression elimination in Julia
Size: 88.9 KB - Last synced: 4 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
timholy/Units.jl
Infrastructure for handling physical units for the Julia programming language
Language: Julia - Size: 14.6 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 5 - Forks: 8
timholy/OCReract.jl Fork of leferrad/OCReract.jl
A simple Julia wrapper for Tesseract OCR
Size: 240 KB - Last synced: 4 days ago - Pushed: 10 months ago - Stars: 0 - Forks: 0
timholy/ArrayIteration.jl
Testing new ideas for array iteration
Language: Julia - Size: 56.6 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 20 - Forks: 4
timholy/LineSearches.jl Fork of JuliaNLSolvers/LineSearches.jl
Line search methods for optimization and root-finding
Size: 357 KB - Last synced: 4 days ago - Pushed: 3 months ago - Stars: 0 - Forks: 0
timholy/DebuggingUtilities.jl
Simple utilities for debugging julia code
Language: Julia - Size: 21.5 KB - Last synced: 1 day ago - Pushed: over 3 years ago - Stars: 25 - Forks: 3
timholy/TestEnv.jl Fork of JuliaTesting/TestEnv.jl
Activate your test enviroment, so you can use your test dependencies in the REPL
Size: 143 KB - Last synced: 4 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0
timholy/HeaderREPLs.jl
Custom interactive REPL prompts that convey status
Language: Julia - Size: 67.4 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 7 - Forks: 2
timholy/IntroToJuliaWashU
A Jupyter notebook giving an overview of the Julia programming language
Language: Jupyter Notebook - Size: 429 KB - Last synced: 4 days ago - Pushed: over 6 years ago - Stars: 6 - Forks: 0
timholy/KernelTools.jl
Fast kernel/stencil operations in Julia
Language: Julia - Size: 25.4 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 6 - Forks: 2
timholy/Layout.jl
Graphics layout management for Julia
Language: Julia - Size: 16.6 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 3 - Forks: 2
timholy/NamedAxesArrays.jl
Performant arrays where each axis can be named
Language: Julia - Size: 4.88 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 5 - Forks: 1
timholy/LinAlgHeaders.jl
Wrap headers for julia's linear algebra dependencies
Language: Julia - Size: 2.93 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 1 - Forks: 1
timholy/libsixel Fork of saitoha/libsixel
A SIXEL encoder/decoder implementation derived from kmiya's sixel (https://github.com/saitoha/sixel).
Size: 33 MB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/qoi Fork of phoboslab/qoi
The “Quite OK Image Format” for fast, lossless image compression
Size: 85 KB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/ChainRulesCore.jl Fork of JuliaDiff/ChainRulesCore.jl
AD-backend agnostic system defining custom forward and reverse mode rules. This is the light weight core to allow you to define rules for your functions in your packages, without depending on any particular AD system.
Size: 4.43 MB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/MultivariateStats.jl Fork of JuliaStats/MultivariateStats.jl
A Julia package for multivariate statistics and data analysis (e.g. dimension reduction)
Size: 410 KB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/SplitApplyCombine.jl Fork of JuliaData/SplitApplyCombine.jl
Split-apply-combine strategies for Julia
Size: 155 KB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/BioAlignments.jl Fork of BioJulia/BioAlignments.jl
Sequence alignment tools
Size: 779 KB - Last synced: 4 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0
timholy/PyCall.jl Fork of JuliaPy/PyCall.jl
Package to call Python functions from the Julia language
Size: 1.39 MB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/CoordinateSplittingPTrees.jl
Accurate and efficient full-degree multidimensional polynomial interpolation
Language: Julia - Size: 103 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 6 - Forks: 1
timholy/HemirealFactorizations.jl
Matrix factorizations over the hemireals
Language: Julia - Size: 29.3 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 1 - Forks: 2
timholy/HemirealNumbers.jl
Implementation of hemireal arithmetic for Julia
Language: Julia - Size: 9.77 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 1 - Forks: 2
timholy/PkgTemplates.jl Fork of JuliaCI/PkgTemplates.jl
Create new Julia packages, the easy way
Size: 1.83 MB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/JuliaOpenCVBindingGenerator Fork of archit120/JuliaOpenCVBindingGenerator
Size: 1.4 MB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/MacroTools.jl Fork of FluxML/MacroTools.jl
A man has written a package. A package has no name.
Size: 346 KB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0
timholy/BioformatsLoader.jl Fork of ahnlabb/BioformatsLoader.jl
A julia package to load images using bioformats
Size: 99.6 KB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/StatsBase.jl Fork of JuliaStats/StatsBase.jl
Basic statistics for Julia
Size: 2.26 MB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/Missings.jl Fork of JuliaData/Missings.jl
Missing value support for Julia
Size: 186 KB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/LinearCovarianceModels.jl Fork of saschatimme/LinearCovarianceModels.jl
Compute MLEs for linear covariance models
Size: 157 KB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/ThreadedIterables.jl Fork of marekdedic/ThreadedIterables.jl
Threaded versions of collection functions in Julia
Size: 222 KB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/InitialValues.jl Fork of JuliaFolds/InitialValues.jl
Canonical default initial values and identity elements for Julia
Size: 374 KB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/FileTrees.jl Fork of shashi/FileTrees.jl
Parallel file processing made easy
Size: 1.44 MB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/ArchGDAL.jl Fork of yeesian/ArchGDAL.jl
A high level API for GDAL - Geospatial Data Abstraction Library
Size: 6.99 MB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/RecipesBase.jl Fork of JuliaPlots/RecipesBase.jl
Base package for defining transformation recipes on user types for Plots.jl
Size: 623 KB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/MultivariatePolynomials.jl Fork of JuliaAlgebra/MultivariatePolynomials.jl
Multivariate polynomials interface
Size: 1.07 MB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
timholy/ChemistryFeaturization.jl Fork of Chemellia/ChemistryFeaturization.jl
Unified graph building and featurizing for Weave.jl, AtomicGraphNets.jl, and (maybe soon) more!
Size: 7.36 MB - Last synced: 4 days ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
timholy/Mouse_WOI Fork of brierl/Mouse_WOI
Mouse wide-field optical imaging processing toolbox
Size: 558 KB - Last synced: 4 days ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
timholy/CairoMakie.jl Fork of JuliaPlots/CairoMakie.jl
Cairo backend for Makie
Size: 338 KB - Last synced: 4 days ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0