urmi-21/pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Language: Python - Size: 204 MB - Last synced: 10 days ago - Pushed: about 3 years ago - Stars: 78 - Forks: 27

urmi-21/PLncPRO

A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)

Language: Python - Size: 43.5 MB - Last synced: 15 days ago - Pushed: over 2 years ago - Stars: 8 - Forks: 5

urmi-21/orfipy

Fast and flexible ORF finder

Language: Python - Size: 5.3 MB - Last synced: 13 days ago - Pushed: over 2 years ago - Stars: 47 - Forks: 6

urmi-21/the-art-of-command-line Fork of jlevy/the-art-of-command-line

Master the command line, in one page

Size: 2.38 MB - Last synced: 2 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

urmi-21/Stat579Project

Stat579Project

Language: R - Size: 77.5 MB - Last synced: 2 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 1

urmi-21/STAT500

STAT500

Size: 0 Bytes - Last synced: 2 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

urmi-21/urminder_singh_resume

My Résumé and CV

Size: 15.4 MB - Last synced: 2 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

urmi-21/scalable_synteny

Synteny analysis pipeline implemented in a scalable, parallelized manner

Language: Python - Size: 12.7 KB - Last synced: 2 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

urmi-21/STAT579

STAT579

Language: HTML - Size: 18.4 MB - Last synced: 2 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1

urmi-21/sra-pyutils

Easy SRA metadata

Language: Python - Size: 285 KB - Last synced: 2 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

urmi-21/rnaseq_tutorial Fork of griffithlab/rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

Language: R - Size: 438 MB - Last synced: 2 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

urmi-21/RNAseq

Scripts and code I wrote for RNA-Seq data aalysis

Language: R - Size: 96.7 KB - Last synced: 2 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

urmi-21/rna-seq-kallisto-sleuth Fork of snakemake-workflows/rna-seq-kallisto-sleuth

A workflow for RNA-seq differential expression analysis based on Kallisto and Sleuth.

Size: 6.95 MB - Last synced: 2 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

urmi-21/RNA-Seq-Normalization-Notes

My notes on RNA-Seq Normalization methods

Size: 228 KB - Last synced: 2 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

urmi-21/python3-dataScience18

python 3 datascience workshop material. Workshop organised by bcbgso at iowastate Oct 2018

Language: Jupyter Notebook - Size: 1.31 MB - Last synced: 2 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

urmi-21/phylostratr Fork of arendsee/phylostratr

An R framework for phylostratigraphy

Language: R - Size: 2.86 MB - Last synced: 2 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

urmi-21/maize_pyrpipe Fork of lijing28101/maize_pyrpipe

Language: Jupyter Notebook - Size: 79.7 MB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

urmi-21/hap.py Fork of Illumina/hap.py

Haplotype VCF comparison tools

Size: 177 MB - Last synced: 2 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

urmi-21/orphan-prediction Fork of eswlab/orphan-prediction

methods for orphan gene prediction paper optimization

Language: Shell - Size: 59.2 MB - Last synced: 2 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

urmi-21/MOGtutorial

Introduction to MOG

Size: 9.59 MB - Last synced: 2 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

urmi-21/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers Fork of CamDavidsonPilon/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

Language: Jupyter Notebook - Size: 130 MB - Last synced: 2 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

urmi-21/dmc2018 Fork of ISU-DMC/dmc2018

Prudsys 2018 Data Mining Cup

Language: HTML - Size: 1.82 MB - Last synced: 2 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

urmi-21/newgit Fork of bera37/newgit

Language: R - Size: 1000 Bytes - Last synced: 2 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

urmi-21/MOG-debugging

Share MOG bugs here as the other repo is private

Language: Python - Size: 2.93 KB - Last synced: 2 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

urmi-21/ORIS

ORIS: An interactive software tool for prediction of replication origin in prokaryotic genomes

Language: Java - Size: 15.7 MB - Last synced: 2 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1

urmi-21/bioinformatics

Useful bioinformatics scripts

Language: Python - Size: 4.6 MB - Last synced: 2 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

urmi-21/bioconda-recipes Fork of bioconda/bioconda-recipes

Conda recipes for the bioconda channel.

Language: Shell - Size: 277 MB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

urmi-21/oldprojects

These are old projects.

Language: C - Size: 23.4 KB - Last synced: 2 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

urmi-21/COVID-DEA

African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors that are associated with immunologic and infectious functions and environmental exposures

Language: R - Size: 446 MB - Last synced: 2 months ago - Pushed: almost 3 years ago - Stars: 3 - Forks: 1

urmi-21/mikado_test

Testing mikado tool

Language: Shell - Size: 13.5 MB - Last synced: 2 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

urmi-21/hello-julia

Trying out Julia language

Language: Julia - Size: 1.95 KB - Last synced: 2 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

urmi-21/COVID_RNASeq_workshop_2021

Hands on workshop for RNA-Seq analysis using pyrpipe, conda and snakemake

Language: Python - Size: 43.7 MB - Last synced: 2 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 1

urmi-21/Human_orphan_genes

A pan-tissue pan-cancer compendium of human orphan genes

Language: Python - Size: 627 KB - Last synced: 2 months ago - Pushed: 3 months ago - Stars: 2 - Forks: 0

urmi-21/microarrayDataProcessing

Language: R - Size: 138 KB - Last synced: 2 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

urmi-21/H2O-examples

Exploring machine learning libraries

Language: R - Size: 521 KB - Last synced: 2 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

urmi-21/COVID-biorxiv

Flexible query for biorxiv and medRxiv COVID-19 collection

Language: Python - Size: 4.21 MB - Last synced: 2 months ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 1

urmi-21/chipTool

Java tool for visualisation of ChIP-seq data

Language: Java - Size: 2.02 MB - Last synced: 2 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

urmi-21/BCB570

Language: R - Size: 96.7 MB - Last synced: 2 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

urmi-21/BCB-python-workshop-2018

Files for the basic python2 workshop taught on 3-23-2018

Language: Python - Size: 31.2 MB - Last synced: 2 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

urmi-21/MetaOmGraph

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

Language: Java - Size: 175 MB - Last synced: 2 months ago - Pushed: about 2 years ago - Stars: 32 - Forks: 14

urmi-21/COVID-19-RNA-Seq-datasets

A repository for sharing information on available COVID-19 RNA-Seq datasets

Language: Python - Size: 258 KB - Last synced: 2 months ago - Pushed: about 2 years ago - Stars: 77 - Forks: 22

urmi-21/csvtoxl

Easily convert csv/tsv to excel (xlsx) taking care of gene names or other data vulnerable to auto conversion by MS-Excel

Language: Java - Size: 1.88 MB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 3 - Forks: 0

urmi-21/TCGA-Data-Analysis

Examples on processing and working with TCGA mutation and RNA-Seq data

Language: R - Size: 2.79 MB - Last synced: 2 months ago - Pushed: about 5 years ago - Stars: 4 - Forks: 2

urmi-21/covid-quantification

A pipeline to quantify COVD-19 infected RNA-Seq samples

Language: Python - Size: 1.56 MB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0

urmi-21/urmi-21.github.io Fork of mmistakes/minimal-mistakes

:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.

Language: HTML - Size: 142 MB - Last synced: 2 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 2

urmi-21/urmi-21

Size: 15.6 KB - Last synced: 2 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

urmi-21/mikado_compare_test

mikado_compare_test

Language: Python - Size: 1.95 KB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

urmi-21/riboseq

scripts used for riboseq analysis

Language: Shell - Size: 11.7 KB - Last synced: 2 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 2