Ecosyste.ms: Repos
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GitHub / vallenderlab 2 repositories
Data and software created and/or published by the Vallender Lab
vallenderlab/MicrobiomeR
A comprehensive and customizable R package for microbiome analysis.
Language: R - Size: 18.8 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 18 - Forks: 3
vallenderlab/rnaseq-tuxedo-suite
An RNASeq snakemake workflow using the Tuxedo suite.
Language: Python - Size: 14.6 KB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 1
vallenderlab/vallenderlab.github.io
This is the software website for the Vallender Lab.
Language: JavaScript - Size: 61.7 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
vallenderlab/nprc-project-reports
Language: R - Size: 23 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
vallenderlab/mgap
Language: Python - Size: 250 KB - Last synced: over 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
vallenderlab/protocols
A repository for the protocols and guides used in Dr. Eric Vallender's lab.
Language: TeX - Size: 854 KB - Last synced: over 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 1
vallenderlab/test-repo
Size: 0 Bytes - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0
vallenderlab/fastStructure Fork of jashapiro/fastStructure
A variational framework for inferring population structure from SNP genotype data.
Language: Python - Size: 603 KB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1
vallenderlab/vallender-pkgdown-theme
A css theme for Vallender Lab pkgdown documentation.
Language: CSS - Size: 4.88 KB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0
vallenderlab/metadata-templates
Size: 0 Bytes - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0
vallenderlab/onboarding
Helpful documents and resources to get started in the Vallender Lab.
Size: 0 Bytes - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0
vallenderlab/vcf_to_dataframe Fork of biocodices/vcf_to_dataframe
Get a pandas DataFrame from a possibly gzipped VCF file.
Language: Python - Size: 627 KB - Last synced: over 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0
vallenderlab/dnaseq-gatk-variant-calling
A DNA sequencing pipeline based on the GATK best-practices workflow.
Language: Python - Size: 1.29 MB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0
vallenderlab/cookiecutter-snakemake-workflow
A cookiecutter for snakemake workflows.
Language: Python - Size: 21.5 KB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0
vallenderlab/snakemake-tutorial
Size: 0 Bytes - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0
vallenderlab/MicrobiomeR-JOSS
This repository hosts our JOSS journal article for the MicrobiomeR package.
Language: TeX - Size: 258 KB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0
vallenderlab/semver.org Fork of semver/semver.org
Semantic Versioning spec and website
Language: CSS - Size: 636 KB - Last synced: over 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
vallenderlab/workflowr-tutorial
Size: 1000 Bytes - Last synced: over 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
vallenderlab/JournalAnalysis
A repository for exploring journals that we would like to publish under.
Language: R - Size: 11.5 MB - Last synced: over 1 year ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0