Ecosyste.ms: Repos

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GitHub / vallenderlab 2 repositories

Data and software created and/or published by the Vallender Lab

vallenderlab/MicrobiomeR

A comprehensive and customizable R package for microbiome analysis.

Language: R - Size: 18.8 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 18 - Forks: 3

vallenderlab/rnaseq-tuxedo-suite

An RNASeq snakemake workflow using the Tuxedo suite.

Language: Python - Size: 14.6 KB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 1

vallenderlab/vallenderlab.github.io

This is the software website for the Vallender Lab.

Language: JavaScript - Size: 61.7 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

vallenderlab/nprc-project-reports

Language: R - Size: 23 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

vallenderlab/mgap

Language: Python - Size: 250 KB - Last synced: over 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

vallenderlab/protocols

A repository for the protocols and guides used in Dr. Eric Vallender's lab.

Language: TeX - Size: 854 KB - Last synced: over 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 1

vallenderlab/test-repo

Size: 0 Bytes - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

vallenderlab/fastStructure Fork of jashapiro/fastStructure

A variational framework for inferring population structure from SNP genotype data.

Language: Python - Size: 603 KB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1

vallenderlab/vallender-pkgdown-theme

A css theme for Vallender Lab pkgdown documentation.

Language: CSS - Size: 4.88 KB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

vallenderlab/metadata-templates

Size: 0 Bytes - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

vallenderlab/onboarding

Helpful documents and resources to get started in the Vallender Lab.

Size: 0 Bytes - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

vallenderlab/vcf_to_dataframe Fork of biocodices/vcf_to_dataframe

Get a pandas DataFrame from a possibly gzipped VCF file.

Language: Python - Size: 627 KB - Last synced: over 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

vallenderlab/dnaseq-gatk-variant-calling

A DNA sequencing pipeline based on the GATK best-practices workflow.

Language: Python - Size: 1.29 MB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

vallenderlab/cookiecutter-snakemake-workflow

A cookiecutter for snakemake workflows.

Language: Python - Size: 21.5 KB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

vallenderlab/snakemake-tutorial

Size: 0 Bytes - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

vallenderlab/MicrobiomeR-JOSS

This repository hosts our JOSS journal article for the MicrobiomeR package.

Language: TeX - Size: 258 KB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

vallenderlab/semver.org Fork of semver/semver.org

Semantic Versioning spec and website

Language: CSS - Size: 636 KB - Last synced: over 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

vallenderlab/workflowr-tutorial

Size: 1000 Bytes - Last synced: over 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

vallenderlab/JournalAnalysis

A repository for exploring journals that we would like to publish under.

Language: R - Size: 11.5 MB - Last synced: over 1 year ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0