vllorens/syntheticGutCommunity

Code to reproduce the RNA-seq analysis from the paper "Mechanistic modeling identifies emergent behavior in a synthetic human gut community"

Language: R - Size: 1.83 MB - Last synced: 10 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 2

vllorens/MDAW_hands_on_2_data_normalization

Hands-on #2 from the Microbiome Data Analysis Workshop (https://mdawo.meetinghand.com/)

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vllorens/wc2019

Tutorial on modeling metabolic pathways with ODEs, from the EMBO Whole Cell Modeling summer school

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vllorens/metaester

Simulate metatranscriptomics datasets

Language: R - Size: 10.6 MB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 1

vllorens/polyester Fork of alyssafrazee/polyester

Bioconductor package "polyester", devel version. RNA-seq read simulator.

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vllorens/basedocker

Base docker file to use in other projects

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vllorens/QMP Fork of raeslab/QMP

Quantitative Microbiome Profiling

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vllorens/covid19_respiratory_microbiome Fork of raeslab/covid19_respiratory_microbiome

Code accompanying the manuscript "Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host"

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vllorens/CMSclassifier Fork of Sage-Bionetworks/CMSclassifier

Language: R - Size: 341 KB - Last synced: 10 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

vllorens/benchmark_microbiome_transformations

Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"

Language: R - Size: 45.1 MB - Last synced: 10 months ago - Pushed: about 3 years ago - Stars: 2 - Forks: 4

vllorens/MDAW_hands_on_1_data_preprocessing

Hands-on #1 from the Microbiome Data Analysis Workshop (https://mdawo.meetinghand.com/)

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vllorens/vllorens.github.io

Personal website of Veronica Llorens Rico

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