yelabucsf/lupus_1M_cells_clean

Language: Jupyter Notebook - Size: 850 MB - Last synced: 3 months ago - Pushed: about 4 years ago - Stars: 6 - Forks: 1

yelabucsf/obesity_scrnaseq

Language: Jupyter Notebook - Size: 37.4 MB - Last synced: 3 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

yelabucsf/spatial

spatial sequencing project @ Ye lab

Language: Jupyter Notebook - Size: 452 MB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

yelabucsf/Cas9_chromosome_loss_scRNA-seq

Language: Jupyter Notebook - Size: 7.77 MB - Last synced: 2 months ago - Pushed: 9 months ago - Stars: 2 - Forks: 1

yelabucsf/scito

Python/C packade for SCITO-seq analysis in Jupyter notebooks

Language: Python - Size: 675 KB - Last synced: 10 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

yelabucsf/cd4_atac_rna_seq_paper_code

Figure Scripts for ATAC-seq/RNA-seq in activated CD4s from 100 samples.

Language: R - Size: 1.48 MB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

yelabucsf/SCITO-seq_Manuscript

SCITO-seq manuscript related

Language: Jupyter Notebook - Size: 193 MB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 8 - Forks: 3

yelabucsf/scrna-parameter-estimation

Direct estimation of mean and covariance from single cell RNA seq experiments

Language: Jupyter Notebook - Size: 177 MB - Last synced: about 2 months ago - Pushed: 2 months ago - Stars: 19 - Forks: 2

yelabucsf/demuxlet_paper_code

Supplementary code for generating some of the figures presented in the demuxlet paper

Language: R - Size: 639 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 5 - Forks: 5

yelabucsf/SKG_rheum

Language: Jupyter Notebook - Size: 167 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

yelabucsf/popscle Fork of statgen/popscle

A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools

Language: C++ - Size: 906 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 1

yelabucsf/ImmunoX_hack

Instructions for setting up environment for scRNA-seq analysis

Size: 10.7 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

yelabucsf/demuxlet Fork of statgen/demuxlet

Genetic multiplexing of barcoded single cell RNA-seq

Size: 6.59 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

yelabucsf/sceQTL

Language: R - Size: 13.4 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0