yesimon/Bio.jl Fork of BioJulia/Bio.jl

Bioinformatics and Computational Biology Infrastructure for Julia

Language: Julia - Size: 1.63 MB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

yesimon/apt-transport-s3 Fork of MayaraCloud/apt-transport-s3

S3 transport for APT

Language: Python - Size: 92.8 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

yesimon/lightsOn Fork of Kidlike/lightsOn

Bash script that prevents the screensaver and display power # management (DPMS) to be activated when you are watching Flash Videos fullscreen on Firefox.

Language: Shell - Size: 15.6 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

yesimon/snakemake-mode Fork of kyleam/snakemake-mode

Emacs major mode for editing Snakemake files

Language: Emacs Lisp - Size: 117 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

yesimon/mosh-ufw-formula

Example salt formula for installing mosh and restrictive ufw on ubuntu

Language: SaltStack - Size: 133 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

yesimon/vntrseek

a computational tool to detect tandem repeat variants in high-throughput sequencing data

Language: C - Size: 625 KB - Last synced: about 1 year ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0

yesimon/django-tastypie Fork of django-tastypie/django-tastypie

Creating delicious APIs for Django apps since 2010. v1.0.0-beta

Language: Python - Size: 1.39 MB - Last synced: about 1 year ago - Pushed: about 12 years ago - Stars: 1 - Forks: 0

yesimon/metax_bakeoff_2019

Language: Jupyter Notebook - Size: 57.5 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 17 - Forks: 2

yesimon/ncbitax

NCBI Taxonomy

Language: Python - Size: 12.7 KB - Last synced: 30 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

yesimon/myoaav_capsid

Language: Jupyter Notebook - Size: 23.3 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

yesimon/af-homology

Alignment free homology tools

Language: Python - Size: 524 KB - Last synced: about 1 year ago - Pushed: over 12 years ago - Stars: 4 - Forks: 0

yesimon/records Fork of kennethreitz/records

SQL for Humans™

Language: Python - Size: 104 KB - Last synced: about 1 year ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 0

yesimon/seqan3 Fork of seqan/seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Size: 10.2 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

yesimon/blastutil

Language: Python - Size: 9.77 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

yesimon/seaborn Fork of mwaskom/seaborn

Statistical data visualization using matplotlib

Language: Python - Size: 46.2 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

yesimon/snakemake-cluster

Running snakemake on a UGE cluster

Language: Shell - Size: 11.7 KB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 3 - Forks: 0

yesimon/dx-toolkit Fork of dnanexus/dx-toolkit

DNAnexus platform client libraries

Language: Java - Size: 23.4 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

yesimon/contra

Language: Shell - Size: 3.91 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

yesimon/dotfiles

Config files for shell

Language: Emacs Lisp - Size: 212 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

yesimon/viral-ngs Fork of broadinstitute/viral-ngs

Viral genomics analysis pipelines

Language: Python - Size: 55.4 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

yesimon/kraken2 Fork of DerrickWood/kraken2

The second version of the Kraken taxonomic sequence classification system

Language: C++ - Size: 236 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

yesimon/krakenuniq Fork of fbreitwieser/krakenuniq

🐙 Metagenomics classifier with unique k-mer counting for more specific results

Language: C++ - Size: 898 KB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

yesimon/kaiju Fork of bioinformatics-centre/kaiju

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

Language: C - Size: 749 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

yesimon/django-analytical Fork of jazzband/django-analytical

Analytics services for Django projects

Language: Python - Size: 447 KB - Last synced: about 1 year ago - Pushed: over 11 years ago - Stars: 0 - Forks: 0

yesimon/pysam Fork of pysam-developers/pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

Language: C - Size: 14.4 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

yesimon/kraken Fork of DerrickWood/kraken

Kraken taxonomic sequence classification system

Language: C++ - Size: 334 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

yesimon/homebrew-cask Fork of Homebrew/homebrew-cask

a CLI workflow for the administration of Mac applications distributed as binaries

Language: Ruby - Size: 11.9 MB - Last synced: about 1 year ago - Pushed: almost 10 years ago - Stars: 0 - Forks: 0

yesimon/gemtools Fork of gemtools/gemtools

GEMTools main repository

Language: C - Size: 16.3 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

yesimon/bioconda-utils Fork of bioconda/bioconda-utils

Utilities for building and managing bioconda recipes

Language: Python - Size: 6.76 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

yesimon/DataFrames.jl Fork of JuliaData/DataFrames.jl

library for working with tabular data in Julia

Language: Julia - Size: 6.92 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

yesimon/ART

ART simulator

Language: C++ - Size: 6.12 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

yesimon/ncbi-genome-download Fork of kblin/ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

Language: Python - Size: 141 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

yesimon/cdhit Fork of weizhongli/cdhit

Automatically exported from code.google.com/p/cdhit

Language: C++ - Size: 3.03 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

yesimon/BEAR Fork of sej917/BEAR

A Better Sequencing Simulator for Metagenomics

Language: Perl - Size: 129 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

yesimon/snap Fork of amplab/snap

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

Language: C++ - Size: 76 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

yesimon/RAPSearch2 Fork of zhaoyanswill/RAPSearch2

Reduced Alphabet based Protein similarity Search

Language: C++ - Size: 3.49 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

yesimon/viral-ngs-deploy Fork of broadinstitute/viral-ngs-deploy

Deployment files related to https://github.com/broadinstitute/viral-ngs

Language: Shell - Size: 69.3 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

yesimon/resource-wrapper

Unify program resources for command line and cluster execution environment

Language: Shell - Size: 10.7 KB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 1 - Forks: 0

yesimon/rosalind

Project Rosalind Solutions

Language: Python - Size: 184 KB - Last synced: about 1 year ago - Pushed: about 11 years ago - Stars: 2 - Forks: 0

yesimon/Azimuth Fork of MicrosoftResearch/Azimuth

Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency

Language: Python - Size: 5.87 MB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

yesimon/staged-recipes Fork of conda-forge/staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Language: Python - Size: 6.29 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

yesimon/Bracken Fork of jenniferlu717/Bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

Language: Python - Size: 153 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

yesimon/pycogent Fork of pycogent/pycogent

PyCogent: Official repository for software and unit tests

Language: Python - Size: 9.74 MB - Last synced: about 1 year ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 0

yesimon/django-templated-email Fork of vintasoftware/django-templated-email

Django module to easily send templated emails using django templates, or using a transactional mail provider (mailchimp, silverpop, etc.)

Language: Python - Size: 213 KB - Last synced: about 1 year ago - Pushed: almost 12 years ago - Stars: 1 - Forks: 0

yesimon/classiwhale

Social news filtering.

Language: JavaScript - Size: 19.9 MB - Last synced: 21 days ago - Pushed: about 12 years ago - Stars: 3 - Forks: 0

yesimon/Krona Fork of marbl/Krona

Interactively explore metagenomes and more from a web browser.

Language: JavaScript - Size: 2.96 MB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

yesimon/Merge.jl

Merge sorted iterators

Language: Julia - Size: 6.84 KB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

yesimon/M-Vicuna

Language: C++ - Size: 54.7 KB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 1 - Forks: 1

yesimon/rust-bio Fork of rust-bio/rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

Language: Rust - Size: 3.43 MB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

yesimon/BufferedStreams.jl Fork of JuliaIO/BufferedStreams.jl

Fast composable IO streams

Language: Julia - Size: 41 KB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

yesimon/homebrew-science Fork of ahmadia/homebrew-science

Scientific formulae for the Homebrew package manager

Language: Ruby - Size: 4.71 MB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

yesimon/homebrew-dupes Fork of keitheis/homebrew-dupes

:two_women_holding_hands: System duplicate formulae for the Homebrew package manager

Language: Ruby - Size: 443 KB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

yesimon/bedtools2 Fork of arq5x/bedtools2

A powerful toolset for genome arithmetic.

Language: C++ - Size: 37.3 MB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

yesimon/bioconda-recipes Fork of bioconda/bioconda-recipes

Conda recipes for the bioconda channel.

Language: Shell - Size: 137 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

yesimon/linuxbrew Fork of Linuxbrew/legacy-linuxbrew

A fork of Homebrew for Linux

Language: Ruby - Size: 70.5 MB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

yesimon/surpi-formula

Salt formula for installing SURPI

Language: SaltStack - Size: 133 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

yesimon/GOTTCHA Fork of poeli/GOTTCHA

More details and updates can be found in our homepage and LANL-Bioinformatics Github site (https://github.com/LANL-Bioinformatics/GOTTCHA). Please visit our homepage at

Language: Perl - Size: 12.1 MB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

yesimon/django-mailer Fork of pinax/django-mailer

mail queuing and management for the Django web framework

Language: Python - Size: 154 KB - Last synced: about 1 year ago - Pushed: almost 12 years ago - Stars: 1 - Forks: 0

yesimon/spacemacs Fork of syl20bnr/spacemacs

Emacs advanced Kit focused on Evil: The best editor is neither Emacs nor Vim, it's Emacs *and* Vim!

Language: Emacs Lisp - Size: 15.2 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

yesimon/undotree Fork of mbbill/undotree

The ultimate undo history visualizer for VIM

Language: VimL - Size: 236 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

yesimon/MICA Fork of ndaniels/MICA

MIcrobiomes using Compressive Acceleration

Language: Go - Size: 3.36 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

yesimon/cablastp2 Fork of ndaniels/cablastp2

Performs BLAST on compressed proteomic data.

Language: Go - Size: 3.09 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

yesimon/Colour-Sampler-Pack Fork of vim-scripts/Colour-Sampler-Pack

[[[Oct 2012 Update]]] Top 100(ish) Themes, GUI Menu

Language: VimL - Size: 352 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

yesimon/janus Fork of carlhuda/janus

Vim distribution

Language: VimL - Size: 638 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

yesimon/batterylog

Log OS X battery stats using launchd

Language: Perl - Size: 129 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

yesimon/terminator-solarized Fork of ghuntley/terminator-solarized

A color theme for terminator using Ethan Schoonover’s Solarized color scheme

Size: 280 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

yesimon/DataArrays.jl Fork of JuliaStats/DataArrays.jl

Data structures that allow missing values

Language: Julia - Size: 522 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

yesimon/homebrew Fork of Homebrew/legacy-homebrew

The missing package manager for OS X.

Language: Ruby - Size: 40.1 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 1 - Forks: 0

yesimon/surpi Fork of chiulab/surpi

SURPI

Language: Shell - Size: 3.13 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 1

yesimon/homebrew-x11 Fork of rdowinton/homebrew-x11

Applications with hard X11 dependencies

Language: Ruby - Size: 138 KB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

yesimon/genometools Fork of genometools/genometools

GenomeTools genome analysis system.

Language: C - Size: 40.7 MB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

yesimon/diamond Fork of bbuchfink/diamond

Accelerated BLAST compatible local sequence aligner.

Language: C - Size: 11.6 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

yesimon/django Fork of django/django

The Web framework for perfectionists with deadlines.

Language: Python - Size: 55 MB - Last synced: about 1 year ago - Pushed: over 11 years ago - Stars: 0 - Forks: 0

yesimon/nextflow Fork of nextflow-io/nextflow

A DSL for data-driven computational pipelines

Language: Groovy - Size: 20.5 MB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

yesimon/tango Fork of broadinstitute/tango

Taxonomic identification of unaligned reads

Language: C++ - Size: 716 KB - Last synced: about 1 year ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0

yesimon/salt-contrib Fork of vmware-archive/salt-contrib

Salt Module Contributions

Language: Python - Size: 877 KB - Last synced: about 1 year ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0

yesimon/salt Fork of saltstack/salt

Infrastructure automation and management system

Language: Python - Size: 113 MB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

yesimon/421

Dice game of the century

Language: Julia - Size: 133 KB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

yesimon/Bokeh Fork of bokeh/bokeh

Statistical plots for Python

Language: CoffeeScript - Size: 2.56 MB - Last synced: about 1 year ago - Pushed: about 11 years ago - Stars: 0 - Forks: 0

yesimon/lobstr-code Fork of mgymrek/lobstr-code

lobSTR: a short tandem repeat profiler for next generation sequencing data

Size: 61.3 MB - Last synced: about 1 year ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0

yesimon/datagoo

Open source power logging using Arduino+GSM.

Language: Arduino - Size: 14.9 MB - Last synced: about 1 year ago - Pushed: about 12 years ago - Stars: 2 - Forks: 0

yesimon/homebrew-games Fork of ziz/homebrew-games

Game formulae for the Homebrew package manager

Language: Ruby - Size: 282 KB - Last synced: about 1 year ago - Pushed: almost 10 years ago - Stars: 0 - Forks: 0

yesimon/rftg

Keldon's RFTG App http://keldon.net/rftg/

Language: C - Size: 29.5 MB - Last synced: about 1 year ago - Pushed: almost 10 years ago - Stars: 0 - Forks: 0

yesimon/libftdi

Language: C - Size: 1.3 MB - Last synced: about 1 year ago - Pushed: almost 10 years ago - Stars: 0 - Forks: 0

yesimon/gochem Fork of rmera/gochem

Language: Go - Size: 30.5 MB - Last synced: about 1 year ago - Pushed: about 10 years ago - Stars: 0 - Forks: 0

yesimon/el-get Fork of dimitri/el-get

Manage the external elisp bits and pieces upon which you depend!

Language: Emacs Lisp - Size: 4.14 MB - Last synced: about 1 year ago - Pushed: about 10 years ago - Stars: 0 - Forks: 0

yesimon/anodi Fork of agoraplex/anodi

A decorater-based backport of PEP-3107 function annotations to Python 2.7, and related tools

Language: Python - Size: 145 KB - Last synced: about 1 year ago - Pushed: about 10 years ago - Stars: 0 - Forks: 0

yesimon/django-jenkins Fork of kmmbvnr/django-jenkins

Plug and play continuous integration with django and jenkins

Language: Python - Size: 289 KB - Last synced: about 1 year ago - Pushed: almost 12 years ago - Stars: 1 - Forks: 0

yesimon/libDAI

A free and open source C++ library for Discrete Approximate Inference in graphical models

Language: C++ - Size: 6.31 MB - Last synced: about 1 year ago - Pushed: over 10 years ago - Stars: 0 - Forks: 1

yesimon/LIBLINEAR

A Library for Large Linear Classification

Language: C - Size: 336 KB - Last synced: about 1 year ago - Pushed: over 10 years ago - Stars: 0 - Forks: 1

yesimon/clojure-koans Fork of functional-koans/clojure-koans

A set of exercises for learning Clojure

Language: Clojure - Size: 270 KB - Last synced: about 1 year ago - Pushed: about 11 years ago - Stars: 0 - Forks: 0

yesimon/django-hunger Fork of joshuakarjala/django-hunger

Django app for managing beta signups and invitations

Language: Python - Size: 279 KB - Last synced: about 1 year ago - Pushed: over 11 years ago - Stars: 1 - Forks: 0

yesimon/emacs-starter-kit Fork of technomancy/emacs-starter-kit

Because the Emacs defaults are not so great sometimes.

Language: Emacs Lisp - Size: 3.13 MB - Last synced: about 1 year ago - Pushed: over 11 years ago - Stars: 0 - Forks: 0

yesimon/django-devserver Fork of dcramer/django-devserver

A drop-in replacement for Django's runserver.

Language: Python - Size: 214 KB - Last synced: about 1 year ago - Pushed: over 11 years ago - Stars: 0 - Forks: 0

yesimon/shaker Fork of rubic/shaker

Create and launch EC2 instances as Salt minions

Language: Python - Size: 134 KB - Last synced: about 1 year ago - Pushed: over 11 years ago - Stars: 0 - Forks: 0

yesimon/yesimon.github.com

Personal website

Language: Ruby - Size: 344 KB - Last synced: about 1 year ago - Pushed: almost 12 years ago - Stars: 1 - Forks: 0

yesimon/gondor-client Fork of eldarion/gondor-client

Official Gondor command line client

Language: Python - Size: 347 KB - Last synced: about 1 year ago - Pushed: almost 12 years ago - Stars: 1 - Forks: 0

yesimon/django-voice Fork of rossp/django-voice

A simple user feedback application for your Django project

Language: Python - Size: 373 KB - Last synced: about 1 year ago - Pushed: almost 12 years ago - Stars: 1 - Forks: 0

yesimon/django-icanhaz Fork of achur/django-icanhaz

Embed icanhaz.js templates into Django templates with minimal fuss.

Language: Python - Size: 98.6 KB - Last synced: about 1 year ago - Pushed: almost 12 years ago - Stars: 1 - Forks: 0