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GitHub / AGOberprieler / LoCoLotive
A pipeline to extract putative low-copy nuclear loci based on published target capture probe sets and custom reference genomes.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AGOberprieler%2FLoCoLotive
Stars: 0
Forks: 0
Open Issues: 0
License: mit
Language: Shell
Repo Size: 830 KB
Dependencies:
15
Created: over 2 years ago
Updated: about 1 year ago
Last pushed: about 1 year ago
Last synced: about 1 year ago
Files
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Readme
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Dependencies
docker/Dockerfile
docker
- debian stable-slim build
environment.yml
conda
- bedops 2.4.39.*
- bedtools 2.30.0.*
- blast 2.11.0.*
- fastx_toolkit 0.0.14.*
- gawk 5.1.0.*
- genometools-genometools 1.6.2.*
- mafft 7.475.*
- numpy 1.24.1.*
- python 3.9.*
- r 4.1.*
- r-ape 5.6_2.*
- r-seqinr 4.2_23.*
- scipy 1.10.0.*
- util-linux 2.36.*