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GitHub / AntonelliLab / seqcap_processor

Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AntonelliLab%2Fseqcap_processor

Stars: 20
Forks: 12
Open Issues: 13

License: mit
Language: Python
Repo Size: 30 MB
Dependencies: 27

Created: over 8 years ago
Updated: about 2 years ago
Last pushed: 11 months ago
Last synced: 28 days ago

Files

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Readme

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Dependencies

bin/aTRAM-master/environment.yml conda

bin/aTRAM-master/requirements.txt pypi

biopython >=1.74
numpy >=1.17.3
psutil >=5.6.3

bin/aTRAM-master/tests/requirements-test.txt pypi

atomicwrites >=1.3.0 test
attrs >=19.3.0 test
biopython >=1.74 test
importlib-metadata >=0.23 test
more-itertools >=7.2.0 test
numpy >=1.17.3 test
packaging >=19.2 test
pluggy >=0.13.0 test
psutil >=5.6.3 test
py >=1.8.0 test
pyparsing >=2.4.2 test
pytest >=5.2.1 test
six >=1.12.0 test
wcwidth >=0.1.7 test
zipp >=0.6.0 test

setup.py pypi

No *