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GitHub / CDCgov / multisignal-epi-inference

Python package for statistical inference and forecast of epi models using multiple signals

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CDCgov%2Fmultisignal-epi-inference

Stars: 6
Forks: 0
Open Issues: 37

License: None
Language: Python
Repo Size: 2.95 MB
Dependencies: 114

Created: 3 months ago
Updated: 3 days ago
Last pushed: 3 days ago
Last synced: 3 days ago

Topics: epidemiology, infectious-disease-models, package, renewal-process

Files

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Readme

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Dependencies

pyproject.toml pypi

ipykernel ^6.29.3 develop
matplotlib ^3.8.3 develop
nbclient ^0.10.0 develop
nbformat ^5.10.0 develop
numpydoc ^1.7.0 develop
pytest-cov ^5.0.0 develop
pytest-mpl ^0.17.0 develop
pyyaml ^6.0.0 develop
jax ^0.4.24
numpy ^1.26.4
numpyro ^0.13.2
pillow ^10.3.0
polars ^0.20.13
python ^3.10

.github/workflows/container_image.yml actions

actions/checkout v4 composite

model/Dockerfile docker

ubuntu 24.04 build

.github/workflows/pre-commit.yaml actions

actions/checkout v4 composite
actions/setup-python v5 composite
pre-commit/action v3.0.1 composite

model/pyproject.toml pypi

jax ^0.4.24
matplotlib ^3.8.3
numpy ^1.26.4
numpyro ^0.13.2
polars ^0.20.13
python ^3.10
pytest ^8.0.0 test

pipeline/pyproject.toml pypi

python ^3.12
pytest ^8.0.1 test
ruff ^0.2.2 test

.github/workflows/test_model.yml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-python v5 composite
codecov/codecov-action v4 composite

.github/workflows/test_pipeline.yml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-python v5 composite

.github/workflows/website.yaml actions

actions/checkout v4 composite
actions/configure-pages v4 composite
actions/deploy-pages v4 composite
actions/setup-python v5 composite
actions/upload-pages-artifact v3 composite

docs/pyproject.toml pypi

jax ^0.4.25
jaxlib ^0.4.25
numpyro ^0.14.0
polars ^0.20.16
python ^3.11
sphinx ^7.2.6
sphinxcontrib-mermaid ^0.9.2

docs/requirements.txt pypi

furo ==2021.11.16

model/poetry.lock pypi

colorama 0.4.6
contourpy 1.2.0
cycler 0.12.1
exceptiongroup 1.2.0
fonttools 4.49.0
iniconfig 2.0.0
jax 0.4.24
jaxlib 0.4.24
kiwisolver 1.4.5
matplotlib 3.8.3
ml-dtypes 0.3.2
multipledispatch 1.0.0
numpy 1.26.4
numpyro 0.13.2
opt-einsum 3.3.0
packaging 23.2
pillow 10.2.0
pluggy 1.4.0
polars 0.20.13
pyparsing 3.1.1
pytest 8.0.0
python-dateutil 2.9.0.post0
scipy 1.12.0
six 1.16.0
tomli 2.0.1
tqdm 4.66.2

docs/poetry.lock pypi

pipeline/poetry.lock pypi

colorama 0.4.6
iniconfig 2.0.0
packaging 23.2
pluggy 1.4.0
pytest 8.0.1
ruff 0.2.2