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GitHub / CNAG-Biomedical-Informatics / pheno-ranker-ui
The web ui (R-Shiny application) for Pheno-Ranker, a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2
Stars: 1
Forks: 0
Open Issues: 21
License: gpl-3.0
Language: R
Repo Size: 8.43 MB
Dependencies:
1,173
Created: 7 months ago
Updated: about 2 months ago
Last pushed: about 2 months ago
Last synced: about 2 months ago
Topics: beacon-v2, bff, data-exploration, golem, json, phenopackets-v2, pxf, r-shiny, r-shiny-apps, semantic-similarity, semantic-similarity-measures
Files
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Readme
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Dependencies
- pozil/auto-assign-issue v1 composite
- actions/checkout v3 composite
- docker/login-action v2.1.0 composite
- docker/setup-buildx-action v2.5.0 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- actions/checkout v3 composite
- actions/setup-node v3 composite
- hearthsim/action-npm-permissive-license-checker v2 composite
- actions/checkout v3 composite
- snyk/actions/docker master composite
- actions/checkout v3 composite
- github/codeql-action/upload-sarif v2 composite
- snyk/actions/docker master composite
.github/workflows/ui-tests.yml
actions
- actions/checkout v3 composite
- cypress-io/github-action v5 composite
- pnpm/action-setup v2 composite
- ComplexHeatmap * imports
- DBI * imports
- DT * imports
- InteractiveComplexHeatmap * imports
- bslib * imports
- config >= 0.3.1 imports
- ggplot2 * imports
- ggrepel * imports
- golem >= 0.4.0 imports
- gridlayout * imports
- jsonlite * imports
- listviewer * imports
- lubridate * imports
- odbc * imports
- plotly * imports
- reactR * imports
- shiny < 1.7.5 imports
- shinyAce * imports
- shinyjs * imports
- shinyvalidate * imports
- sortable * imports
- yaml * imports
- zip * imports
- knitr * suggests
- reactlog * suggests
- rmarkdown * suggests
- spelling * suggests
- testthat >= 3.0.0 suggests
docker-compose.prod.yml
docker
- nginx 1.25.3-alpine
- openanalytics/shinyproxy 3.0.2
- postgres 16.1-alpine3.18
- quay.io/keycloak/keycloak 20.0.1
docker-compose.yml
docker
- phenorankerui ${DOCKER_IMG_TAG}
- postgres 13-alpine
- EditorConfig ==0.12.3
- Jinja2 ==3.1.2
- Markdown ==3.3.7
- MarkupSafe ==2.1.3
- PyYAML ==6.0
- Pygments ==2.15.1
- beautifulsoup4 ==4.12.2
- certifi ==2023.7.22
- charset-normalizer ==3.1.0
- click ==8.1.3
- colorama ==0.4.6
- ghp-import ==2.1.0
- idna ==3.4
- jsbeautifier ==1.14.8
- mdx-gh-links ==0.3
- mergedeep ==1.3.4
- mkdocs ==1.4.3
- mkdocs-macros-plugin ==1.0.1
- mkdocs-material ==9.1.16
- mkdocs-material-extensions ==1.1.1
- mkdocs-mermaid2-plugin ==0.6.0
- packaging ==23.1
- pymdown-extensions ==10.0.1
- python-dateutil ==2.8.2
- pyyaml_env_tag ==0.1
- regex ==2023.6.3
- requests ==2.31.0
- six ==1.16.0
- soupsieve ==2.4.1
- termcolor ==2.3.0
- urllib3 ==2.0.3
- watchdog ==3.0.0
- actions/checkout v3 composite
- docker/login-action v2.1.0 composite
- docker/setup-buildx-action v2.5.0 composite
- actions/checkout v4 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-renv v2 composite
- actions/checkout v4 composite
- actions/upload-artifact v4 composite
- codecov/codecov-action v4 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-renv v2 composite
- @storybook/addon-essentials ^8.0.2 development
- @storybook/addon-interactions ^8.0.2 development
- @storybook/addon-links ^8.0.2 development
- @storybook/addon-onboarding ^8.0.2 development
- @storybook/blocks ^8.0.2 development
- @storybook/react ^8.0.2 development
- @storybook/react-vite ^8.0.2 development
- @storybook/test ^8.0.2 development
- @types/react ^18.2.43 development
- @types/react-dom ^18.2.17 development
- @typescript-eslint/eslint-plugin ^6.14.0 development
- @typescript-eslint/parser ^6.14.0 development
- @vitejs/plugin-react ^4.2.1 development
- eslint ^8.55.0 development
- eslint-plugin-react-hooks ^4.6.0 development
- eslint-plugin-react-refresh ^0.4.5 development
- eslint-plugin-storybook ^0.8.0 development
- storybook ^8.0.2 development
- typescript ^5.2.2 development
- vite ^5.0.8 development
- vite-plugin-commonjs ^0.10.1 development
- evt ^2.5.7
- keycloakify ^9.6.3
- oidc-spa ^4.2.1
- powerhooks ^1.0.8
- react ^18.2.0
- react-dom ^18.2.0
- tsafe ^1.6.6
- zod ^3.22.4