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GitHub / Cai-Lab-at-University-of-Michigan / MiCV
MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Cai-Lab-at-University-of-Michigan%2FMiCV
Stars: 5
Forks: 1
Open Issues: 2
License: apache-2.0
Language: CSS
Repo Size: 9.3 MB
Dependencies:
32
Created: over 3 years ago
Updated: about 1 year ago
Last pushed: over 1 year ago
Last synced: about 1 year ago
Topics: anndata, clustering, gene-expression, leiden, marker-genes, pseudotime, pseudotime-trajectory, scanpy, umap-projection
Files
Dependencies
- bbknn ==1.3.7
- bcrypt *
- blosc ==1.9.1
- bootstrap-flask *
- celery ==4.4.2
- cmake *
- colour *
- dash ==1.7.0
- dash-bootstrap-components ==0.8.2
- dash-dangerously-set-inner-html *
- dash_core_components ==1.6.0
- dash_html_components ==1.0.2
- email_validator *
- filelock ==3.0.12
- flask ==1.1.2
- flask-security-too ==3.4.3
- flask-sqlalchemy *
- flask_caching ==1.8.0
- gevent ==20.5.0
- gunicorn ==20.0.4
- leidenalg ==0.7.0
- magic-impute ==2.0.3
- numba ==0.48.0
- palantir ==0.2.6
- plotly ==4.3.0
- pygam ==0.8.0
- redis *
- scanpy ==1.5.1
- sendgrid *
- shortuuid ==1.0.1
- umap-learn ==0.4.3
- zarr ==2.4.0