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GitHub / ChrisPaneque / BioREx

This repository is part of the development of the following Master Thesis: Relation Extraction between Biomedical Entities from Scientific Texts.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ChrisPaneque%2FBioREx

Stars: 1
Forks: 0
Open Issues: 0

License: None
Language: Jupyter Notebook
Repo Size: 7.69 MB
Dependencies: 217

Created: almost 2 years ago
Updated: over 1 year ago
Last pushed: almost 2 years ago
Last synced: about 1 year ago

Files

Readme

Dependencies

requirements.txt pypi

Brotli ==1.0.9
Django ==3.2.12
GitPython ==3.1.27
Jinja2 ==3.0.3
Keras-Preprocessing ==1.1.2
Markdown ==3.3.6
MarkupSafe ==2.1.0
Pillow ==9.0.1
PyMuPDF ==1.19.5
PyPDF2 ==1.27.8
PyYAML ==6.0
Pygments ==2.11.2
Pympler ==1.0.1
SQLAlchemy ==1.4.32
Send2Trash ==1.8.0
Werkzeug ==2.0.3
absl-py ==1.0.0
aiohttp ==3.8.1
aiosignal ==1.2.0
altair ==4.2.0
argon2-cffi ==21.3.0
argon2-cffi-bindings ==21.2.0
asgiref ==3.5.0
asttokens ==2.0.5
astunparse ==1.6.3
async-timeout ==4.0.2
attrs ==21.4.0
backcall ==0.2.0
beautifulsoup4 ==4.10.0
bleach ==4.1.0
blinker ==1.4
blis ==0.7.6
cachetools ==5.0.0
catalogue ==2.0.6
certifi ==2021.10.8
cffi ==1.15.0
charset-normalizer ==2.0.12
click ==8.0.4
cloudpickle ==2.0.0
cssselect2 ==0.6.0
cycler ==0.11.0
cymem ==2.0.6
dask ==2022.3.0
datasets ==2.0.0
debugpy ==1.6.0
decorator ==5.1.1
defusedxml ==0.7.1
dill ==0.3.4
django-filter ==21.1
django-widget-tweaks ==1.4.12
djangorestframework ==3.13.1
docker-pycreds ==0.4.0
entrypoints ==0.4
executing ==0.8.3
filelock ==3.6.0
flatbuffers ==2.0
fonttools ==4.31.1
frozenlist ==1.3.0
fsspec ==2022.2.0
gast ==0.5.3
gitdb ==4.0.9
google-auth ==2.6.2
google-auth-oauthlib ==0.4.6
google-pasta ==0.2.0
greenlet ==1.1.2
grpcio ==1.44.0
h5py ==3.6.0
html5lib ==1.1
huggingface-hub ==0.4.0
idna ==3.3
importlib-metadata ==4.11.3
ipykernel ==6.9.2
ipython ==8.1.1
ipython-genutils ==0.2.0
ipywidgets ==7.7.0
jedi ==0.18.1
joblib ==1.1.0
jsonschema ==4.4.0
jupyter-client ==7.1.2
jupyter-core ==4.9.2
jupyterlab-pygments ==0.1.2
jupyterlab-widgets ==1.1.0
keras ==2.8.0
keras-embed-sim ==0.10.0
keras-layer-normalization ==0.16.0
keras-multi-head ==0.29.0
keras-pos-embd ==0.13.0
keras-position-wise-feed-forward ==0.8.0
keras-self-attention ==0.51.0
keras-transformer ==0.40.0
kiwisolver ==1.4.0
langcodes ==3.3.0
libclang ==13.0.0
locket ==0.2.1
lxml ==4.8.0
matplotlib ==3.5.1
matplotlib-inline ==0.1.3
mistune ==0.8.4
multidict ==6.0.2
multiprocess ==0.70.12.2
murmurhash ==1.0.6
nbclient ==0.5.13
nbconvert ==6.4.4
nbformat ==5.2.0
ndjson ==0.3.1
nest-asyncio ==1.5.4
nltk ==3.7
notebook ==6.4.10
numpy ==1.21.5
oauthlib ==3.2.0
opt-einsum ==3.3.0
packaging ==21.3
pandas ==1.3.5
pandocfilters ==1.5.0
parso ==0.8.3
partd ==1.2.0
pathtools ==0.1.2
pathy ==0.6.1
pexpect ==4.8.0
pickl ==0.3.0
pickleshare ==0.7.5
preshed ==3.0.6
prometheus-client ==0.13.1
promise ==2.3
prompt-toolkit ==3.0.28
protobuf ==3.19.4
psutil ==5.9.0
ptyprocess ==0.7.0
pure-eval ==0.2.2
py4j ==0.10.9.5
pyarrow ==7.0.0
pyasn1 ==0.4.8
pyasn1-modules ==0.2.8
pycparser ==2.21
pydantic ==1.8.2
pydeck ==0.7.1
pydyf ==0.2.0
pyparsing ==3.0.7
pyphen ==0.12.0
pyrsistent ==0.18.1
python-dateutil ==2.8.2
python-docx ==0.8.11
pytz ==2021.3
pytz-deprecation-shim ==0.1.0.post0
pyzmq ==22.3.0
regex ==2022.3.2
reportlab ==3.6.10
requests ==2.27.1
requests-oauthlib ==1.3.1
responses ==0.18.0
rsa ==4.8
sacremoses ==0.0.49
scikit-learn ==1.0.2
scipy ==1.8.0
semver ==2.13.0
sentence-splitter ==1.4
sentencepiece ==0.1.96
sentry-sdk ==1.5.8
seqeval ==1.2.2
setproctitle ==1.2.2
shortuuid ==1.0.8
simpletransformers ==0.63.6
six ==1.16.0
sklearn ==0.0
smart-open ==5.2.1
smmap ==5.0.0
soupsieve ==2.3.1
spacy ==3.2.1
spacy-legacy ==3.0.9
spacy-loggers ==1.0.1
sqlparse ==0.4.2
srsly ==2.4.2
stack-data ==0.2.0
streamlit ==1.8.0
swifter ==1.1.2
tensorboard ==2.8.0
tensorboard-data-server ==0.6.1
tensorboard-plugin-wit ==1.8.1
tensorflow ==2.8.0
tensorflow-hub ==0.12.0
tensorflow-io-gcs-filesystem ==0.24.0
tensorflow-text ==2.8.1
termcolor ==1.1.0
terminado ==0.13.3
testpath ==0.6.0
tf-estimator-nightly ==2.8.0.dev2021122109
thinc ==8.0.13
threadpoolctl ==3.1.0
tinycss2 ==1.1.1
tokenizers ==0.11.6
toml ==0.10.2
toolz ==0.11.2
torch ==1.11.0
torchtext ==0.12.0
tornado ==6.1
tqdm ==4.63.0
traitlets ==5.1.1
transformers ==4.17.0
typer ==0.4.0
typing_extensions ==4.1.1
tzdata ==2022.1
tzlocal ==4.1
urllib3 ==1.26.8
validators ==0.18.2
wandb ==0.12.11
wasabi ==0.9.0
watchdog ==2.1.7
wcwidth ==0.2.5
weasyprint ==55.0
webencodings ==0.5.1
widgetsnbextension ==3.6.0
wrapt ==1.14.0
xxhash ==3.0.0
yarl ==1.7.2
yaspin ==2.1.0
zipp ==3.7.0
zopfli ==0.2.1