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GitHub / Christensen-Lab-Dartmouth / PyMethylProcess
Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
Stars: 33
Forks: 8
Open Issues: 9
License: mit
Language: Python
Repo Size: 55.7 MB
Dependencies:
36
Created: over 5 years ago
Updated: about 1 month ago
Last pushed: over 4 years ago
Last synced: 16 days ago
Files
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Readme
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Dependencies
- Cython *
- click ==6.7
- cvxpy ==1.0.25
- fancyimpute >=0.4.2
- kneed *
- matplotlib *
- mlxtend *
- networkx *
- nevergrad *
- numpy *
- pandas >=0.23.4
- pathos *
- plotly >=3.4.2
- rpy2 ==2.9.4
- scikit-learn >=0.20.1
- seaborn *
- shap *
- umap-learn >=0.3.7
setup.py
pypi
- Cython *
- click ==6.7
- cvxpy ==1.0.25
- fancyimpute >=0.4.2
- kneed *
- matplotlib *
- mlxtend *
- networkx *
- nevergrad *
- numpy *
- pandas >=0.23.4
- pathos *
- plotly >=3.4.2
- rpy2 ==2.9.4
- scikit-learn >=0.20.1
- seaborn *
- shap *
- umap-learn >=0.3.7