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GitHub / GenomicsNX / NGI-ChIPseq
Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GenomicsNX%2FNGI-ChIPseq
Fork of nf-core/chipseq
Stars: 0
Forks: 0
Open Issues: 0
License: mit
Language: Nextflow
Repo Size: 11.3 MB
Dependencies:
45
Created: about 7 years ago
Updated: almost 3 years ago
Last pushed: almost 3 years ago
Last synced: about 2 months ago
Files
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Readme
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Dependencies
- goanpeca/setup-miniconda v1.0.2 composite
.github/workflows/awstest.yml
actions
- goanpeca/setup-miniconda v1.0.2 composite
.github/workflows/ci.yml
actions
- actions/checkout v2 composite
- technote-space/get-diff-action v1 composite
.github/workflows/linting.yml
actions
- actions/checkout v2 composite
- actions/checkout v1 composite
- actions/setup-node v1 composite
- actions/setup-python v1 composite
environment.yml
conda
- bamtools 2.5.1.*
- bedtools 2.29.2.*
- bioconductor-biocparallel 1.20.0.*
- bioconductor-deseq2 1.26.0.*
- bioconductor-vsn 3.54.0.*
- bwa 0.7.17.*
- deeptools 3.4.3.*
- fastqc 0.11.9.*
- gawk 5.1.0.*
- homer 4.11.*
- macs2 2.2.7.1.*
- markdown 3.2.2.*
- multiqc 1.9.*
- phantompeakqualtools 1.2.2.*
- picard 2.23.1.*
- pigz 2.3.4.*
- preseq 2.0.3.*
- pygments 2.6.1.*
- pymdown-extensions 7.1.*
- pysam 0.15.3.*
- python 3.7.6.*
- r-base 3.6.3.*
- r-ggplot2 3.3.2.*
- r-lattice 0.20_41.*
- r-optparse 1.6.6.*
- r-pheatmap 1.0.12.*
- r-rcolorbrewer 1.1_2.*
- r-reshape2 1.4.4.*
- r-scales 1.1.1.*
- r-tidyr 1.1.0.*
- r-upsetr 1.4.0.*
- r-xfun 0.20.*
- samtools 1.10.*
- subread 2.0.1.*
- trim-galore 0.6.5.*
- ucsc-bedgraphtobigwig 357.*
Dockerfile
docker
- nfcore/base 1.9 build