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GitHub / KL-Bloomer / mres-malaria-gene-expression
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KL-Bloomer%2Fmres-malaria-gene-expression
Stars: 1
Forks: 0
Open Issues: 0
License: None
Language: R
Repo Size: 16.1 MB
Dependencies:
28
Created: about 3 years ago
Updated: over 2 years ago
Last pushed: about 2 years ago
Last synced: over 1 year ago
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Dependencies
requirements.txt
pypi
- bedtools =2.30.0
- bioconductor-edger =3.32.0
- bioconductor-gviz =1.34.1
- bioconductor-sva =3.38.0
- bioconductor-topgo =2.42.0
- bwa-mem2 =2.2.1
- deeptools =3.5.1
- fastqc =0.11.9
- gffutils =0.10.1
- hisat2 =2.2.1
- igv =2.9.2
- multiqc =1.11
- r-data.table =1.14.0
- r-dplyr =1.0.7
- r-emmeans =1.6.2
- r-ggbeeswarm =0.6.0
- r-ggplot2 =3.3.3
- r-ggrepel =0.9.1
- r-gplots =3.1.1
- r-lme4 =1.1
- r-lmerTest =3.1.3
- r-pbkrtest =0.5.1
- r-r.utils =2.10.1
- r-stringr =1.4.0
- r-tidyr =1.1.3
- samtools =1.11
- snakemake =6.0.0
- subread =2.0.1