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GitHub / LokiLuciferase / phenotrex
End-to-end Microbial Phenotypic Trait Prediction
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LokiLuciferase%2Fphenotrex
Stars: 3
Forks: 4
Open Issues: 2
License: other
Language: Python
Repo Size: 28.3 MB
Dependencies:
45
Created: over 5 years ago
Updated: about 1 year ago
Last pushed: over 1 year ago
Last synced: 7 months ago
Files
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Readme
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Dependencies
requirements/dev.txt
pypi
- biopython >=1.74,<=1.77
- click >=7.0
- matplotlib >=3.1.3
- numpy >=1.15
- pandas >=1.0
- scikit-learn >=0.22,<=0.23.2
- shap >=0.34,<0.36
- tqdm >=4.26.0
- xgboost >=1.0.1,<=1.3
requirements/rtd.txt
pypi
- Sphinx >=2.1
- bumpversion *
- codecov *
- coverage *
- flake8 *
- graphviz *
- mock *
- nose *
- numpydoc *
- pip *
- pytest *
- pytest-cov *
- pytest-runner *
- scikit-learn >=0.21
- sphinx-automodapi *
- sphinx-pdj-theme *
- tox *
- twine *
- watchdog *
- wheel *
- codecov * test
- pytest >=4.6.5 test
- pytest-cov * test
- pytest-runner >=5.1 test
requirements/win.txt
pypi
- torch ==1.7.0
Dockerfile
docker
- ubuntu focal build