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GitHub / MangiolaLaboratory / HPCell
Massively scalable R-native HPC-compatible pipeline for single-cell data analysis
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MangiolaLaboratory%2FHPCell
Stars: 2
Forks: 4
Open Issues: 15
License: None
Language: R
Repo Size: 26.6 MB
Dependencies:
46
Created: almost 2 years ago
Updated: 8 days ago
Last pushed: 2 days ago
Last synced: 2 days ago
Topics: r, single-cell, targets-pipeline, tidyverse
Files
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Readme
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Dependencies
.github/workflows/check-bioc.yml
actions
- JamesIves/github-pages-deploy-action releases/v4 composite
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/upload-artifact master composite
- docker/build-push-action v4 composite
- docker/login-action v2 composite
- docker/setup-buildx-action v2 composite
- docker/setup-qemu-action v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
DESCRIPTION
cran
- CellChat * imports
- DropletUtils * imports
- EnsDb.Hsapiens.v86 * imports
- Seurat * imports
- SingleR * imports
- celldex * imports
- cowplot * imports
- dplyr * imports
- ggplot2 * imports
- ggupset * imports
- glmGamPoi * imports
- glue * imports
- gridGraphics * imports
- here * imports
- magrittr * imports
- patchwork * imports
- purrr * imports
- qs * imports
- readr * imports
- rlang * imports
- scDblFinder * imports
- scater * imports
- sccomp * imports
- sctransform >= 0.3.3 imports
- scuttle * imports
- stringr * imports
- tarchetypes * imports
- targets * imports
- tibble * imports
- tidyHeatmap * imports
- tidySingleCellExperiment * imports
- tidySummarizedExperiment * imports
- tidybulk * imports
- tidyr * imports
- tidyseurat * imports
- testthat >= 3.0.0 suggests