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GitHub / NBISweden / excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NBISweden%2Fexcelerate-scRNAseq
Stars: 209
Forks: 106
Open Issues: 4
License: None
Language: HTML
Repo Size: 342 MB
Dependencies:
47
Created: about 5 years ago
Updated: 4 months ago
Last pushed: almost 2 years ago
Last synced: 3 months ago
Files
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Readme
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Dependencies
environment.yaml
conda
- bioconductor-biodist 1.54.0.*
- bioconductor-biomart 2.38.*
- bioconductor-destiny 2.12.0.*
- bioconductor-gseabase 1.44.0.*
- bioconductor-gsva 1.30.0.*
- bioconductor-hsmmsinglecell 1.2.0.*
- bioconductor-mast 1.8.1.*
- bioconductor-monocle 2.10.0.*
- bioconductor-netbiov 1.16.0.*
- bioconductor-sc3 1.10.0.*
- bioconductor-scde 2.10.0.*
- bioconductor-scnorm 1.4.3.*
- bioconductor-scran 1.10.1.*
- bioconductor-singlecellexperiment 1.4.0.*
- bioconductor-singscore 1.2.2.*
- clang 4.0.1.*
- fftw 3.3.8.*
- gcc 4.8.5.*
- r-base 3.5.1.*
- r-biocmanager 1.30.*
- r-corrplot 0.84.*
- r-cowplot 0.9.4.*
- r-dendextend 1.10.0.*
- r-dofuture 0.8.0.*
- r-fields 9.6.1.*
- r-flexmix 2.3_15.*
- r-hdf5r 1.2.0.*
- r-knitr 1.20.*
- r-modes 0.7.0.*
- r-mvoutlier 2.0.9.*
- r-optparse 1.6.*
- r-outliers 0.14.*
- r-pheatmap 1.0.*
- r-rmarkdown
- r-sctransform 0.2.0.*
- r-seurat 3.0.0.*
- r-umap 0.2.*
- r-umap 0.2.0.0.*
- rstudio 1.1.456.*
- umap-learn 0.3.8.*
- wget