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GitHub / SIITW / Antigen-Antibody-Binding-Site-Predictor
Antigen-Antibody-Binding-Site-Predictor
Stars: 0
Forks: 0
Open Issues: 0
License: None
Language: Jupyter Notebook
Repo Size: 134 MB
Dependencies:
326
Created: 5 months ago
Updated: 4 months ago
Last pushed: 3 months ago
Last synced: 3 months ago
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Dependencies
se3/requirements.txt
pypi
- Cython ==0.29.16
- Markdown ==3.2.1
- Werkzeug ==1.0.0
- absl-py ==0.9.0
- certifi ==2019.11.28
- chardet ==3.0.4
- cycler ==0.10.0
- grpcio ==1.27.2
- h5py ==2.10.0
- idna ==2.9
- joblib ==0.14.1
- kiwisolver ==1.1.0
- matplotlib ==3.2.1
- numpy ==1.18.2
- protobuf ==3.11.3
- pyparsing ==2.4.6
- python-dateutil ==2.8.1
- requests ==2.23.0
- scikit-learn ==0.22.2.post1
- scipy ==1.4.1
- six ==1.14.0
- sklearn ==0.0
- tensorboard ==1.14.0
- urllib3 ==1.25.8
se3/setup.py
pypi
requirements.txt
pypi
- Babel ==2.13.1
- GitPython ==3.1.40
- Jinja2 ==3.1.2
- Keras-Applications ==1.0.8
- MarkupSafe ==2.1.3
- Pillow ==9.5.0
- PyYAML ==6.0.1
- Pygments ==2.16.1
- Send2Trash ==1.8.2
- Sphinx ==4.3.2
- StrBioInfo ==0.9a0.dev1
- absl-py ==2.0.0
- alabaster ==0.7.13
- anyio ==3.7.1
- appdirs ==1.4.4
- argon2-cffi ==23.1.0
- argon2-cffi-bindings ==21.2.0
- ast_decompiler ==0.7.0
- astatine ==0.3.3
- astor ==0.8.1
- astpretty ==2.1.0
- astroid ==2.11.7
- asttokens ==2.4.1
- attrs ==23.1.0
- autoflake ==1.7.8
- backcall ==0.2.0
- bandit ==1.7.5
- beautifulsoup4 ==4.12.2
- biopython ==1.81
- black ==22.12.0
- bleach ==6.0.0
- brotlipy ==0.7.0
- cffi ==1.15.1
- chardet ==3.0.4
- charset-normalizer ==2.1.1
- click ==8.1.7
- cognitive-complexity ==1.3.0
- comm ==0.1.4
- contextlib2 ==21.6.0
- coverage ==6.5.0
- cycler ==0.11.0
- darglint ==1.8.1
- dask ==2.2.0
- debugpy ==1.7.0
- decorator ==5.1.1
- defusedxml ==0.7.1
- dill ==0.3.7
- distlib ==0.3.7
- dlint ==0.14.1
- doc8 ==0.11.2
- docformatter ==1.7.5
- docutils ==0.17.1
- domdf-python-tools ==3.7.0
- einops ==0.6.1
- entrypoints ==0.4
- eradicate ==2.3.0
- exceptiongroup ==1.1.3
- fastjsonschema ==2.19.0
- filelock ==3.12.2
- flake8 ==4.0.1
- flake8-2020 ==1.6.1
- flake8-aaa ==0.15.0
- flake8-annotations ==2.9.1
- flake8-annotations-complexity ==0.0.8
- flake8-annotations-coverage ==0.0.6
- flake8-bandit ==3.0.0
- flake8-black ==0.3.6
- flake8-blind-except ==0.2.1
- flake8-breakpoint ==1.1.0
- flake8-broken-line ==0.4.0
- flake8-bugbear ==22.12.6
- flake8-builtins ==1.5.3
- flake8-class-attributes-order ==0.1.3
- flake8-coding ==1.3.2
- flake8-cognitive-complexity ==0.1.0
- flake8-commas ==2.1.0
- flake8-comments ==0.1.2
- flake8-comprehensions ==3.13.0
- flake8-debugger ==4.1.2
- flake8-django ==1.2
- flake8-docstrings ==1.7.0
- flake8-encodings ==0.5.0.post1
- flake8-eradicate ==1.4.0
- flake8-executable ==2.1.3
- flake8-expression-complexity ==0.0.11
- flake8-fixme ==1.1.1
- flake8-functions ==0.0.8
- flake8-functions-names ==0.1.0
- flake8-future-annotations ==0.0.5
- flake8-helper ==0.2.1
- flake8-isort ==4.2.0
- flake8-literal ==1.3.0
- flake8-logging-format ==0.9.0
- flake8-markdown ==0.3.0
- flake8-mutable ==1.2.0
- flake8-no-pep420 ==2.6.0
- flake8-noqa ==1.3.2
- flake8-pie ==0.16.0
- flake8-plugin-utils ==1.3.3
- flake8-polyfill ==1.0.2
- flake8-pyi ==22.11.0
- flake8-pylint ==0.2.1
- flake8-pytest-style ==1.6.0
- flake8-quotes ==3.3.2
- flake8-rst-docstrings ==0.2.7
- flake8-secure-coding-standard ==1.3.0
- flake8-slots ==0.1.5
- flake8-string-format ==0.3.0
- flake8-tidy-imports ==4.9.0
- flake8-typing-imports ==1.12.0
- flake8-use-fstring ==1.4
- flake8-use-pathlib ==0.3.0
- flake8-useless-assert ==0.4.4
- flake8-variables-names ==0.0.6
- flake8-warnings ==0.4.0
- flake8_simplify ==0.21.0
- fonttools ==4.38.0
- fsspec ==2023.1.0
- gitdb ==4.0.11
- h5py ==3.8.0
- huggingface-hub ==0.16.4
- hypothesis ==6.79.4
- hypothesmith ==0.1.9
- idna *
- imagesize ==1.4.1
- importlib-metadata *
- importlib-resources ==5.12.0
- iniconfig ==2.0.0
- ipykernel ==6.16.2
- ipython ==7.34.0
- ipython-genutils ==0.2.0
- ipywidgets ==8.1.1
- isort ==5.11.5
- jedi ==0.19.1
- joblib ==1.3.2
- jsonpickle ==3.0.2
- jsonschema ==4.17.3
- jupyter-server ==1.24.0
- jupyter_client ==7.4.9
- jupyter_core ==4.12.0
- jupyterlab-flake8 ==0.7.1
- jupyterlab-pygments ==0.2.2
- jupyterlab-widgets ==3.0.9
- kaleido ==0.2.1
- kiwisolver ==1.4.5
- lark-parser ==0.12.0
- lazy-object-proxy ==1.9.0
- libconfig ==0.9.2
- libcst ==0.4.10
- lxml ==4.9.3
- markdown-it-py ==2.2.0
- matplotlib ==3.5.3
- matplotlib-inline ==0.1.6
- mccabe ==0.6.1
- mdurl ==0.1.2
- mistune ==3.0.2
- mkl-fft ==1.3.1
- mkl-random *
- mkl-service ==2.4.0
- ml-collections ==0.1.1
- mmcif-pdbx ==2.0.1
- more-itertools ==8.2.0
- mr-proper ==0.0.7
- mypy-extensions ==1.0.0
- natsort ==8.4.0
- nbclassic ==1.0.0
- nbclient ==0.7.4
- nbconvert ==7.6.0
- nbformat ==5.8.0
- nest-asyncio ==1.5.8
- networkx ==2.6.3
- nose ==1.3.7
- notebook ==6.5.6
- notebook_shim ==0.2.3
- numpy *
- nvidia-cublas-cu11 ==11.10.3.66
- nvidia-cuda-nvrtc-cu11 ==11.7.99
- nvidia-cuda-runtime-cu11 ==11.7.99
- nvidia-cudnn-cu11 ==8.5.0.96
- open3d ==0.8.0.0
- opencv-python ==4.5.5.62
- package-name ==0.1
- packaging ==23.2
- pandas ==1.1.5
- pandas-vet ==0.2.3
- pandocfilters ==1.5.0
- parso ==0.8.3
- pathlib ==1.0.1
- pathspec ==0.9.0
- pbr ==6.0.0
- pdb2sql ==0.5.3
- pep8-naming ==0.12.1
- pexpect ==4.8.0
- pickleshare ==0.7.5
- pkgutil_resolve_name ==1.3.10
- platformdirs ==2.6.2
- plotly ==5.18.0
- pluggy ==0.13.1
- prometheus-client ==0.17.1
- prompt-toolkit ==3.0.41
- propka ==3.4.0
- psutil ==5.9.6
- ptyprocess ==0.7.0
- py ==1.8.1
- pybetter ==0.4.1
- pybind11 ==2.11.1
- pycln ==1.3.5
- pycodestyle ==2.8.0
- pydocstyle ==6.3.0
- pyemojify ==0.2.0
- pyflakes ==2.4.0
- pylint ==2.13.9
- pynion ==0.0.4
- pyparsing ==2.4.7
- pyrsistent ==0.19.3
- pytest ==7.4.3
- pytest-cov ==3.0.0
- pytest-sugar ==0.9.7
- python-dateutil ==2.8.2
- python-dev-tools ==2022.5.27
- pytz ==2019.3
- pyupgrade ==2.38.4
- pyzmq ==24.0.1
- regex ==2023.12.25
- removestar ==1.5
- restructuredtext-lint ==1.4.0
- rich ==13.7.0
- safetensors ==0.4.1
- scikit-learn ==1.0.2
- scipy ==1.7.3
- seaborn ==0.12.2
- sklearn ==0.0
- smmap ==5.0.1
- sniffio ==1.3.0
- snowballstemmer ==2.2.0
- sortedcontainers ==2.4.0
- soupsieve ==2.4.1
- sphinxcontrib-applehelp ==1.0.2
- sphinxcontrib-devhelp ==1.0.2
- sphinxcontrib-htmlhelp ==2.0.0
- sphinxcontrib-jsmath ==1.0.1
- sphinxcontrib-qthelp ==1.0.3
- sphinxcontrib-serializinghtml ==1.1.5
- ssort ==0.10.0
- stdlib-list ==0.9.0
- stevedore ==3.5.2
- tenacity ==8.2.3
- termcolor ==2.3.0
- terminado ==0.17.1
- threadpoolctl ==3.1.0
- tinycss2 ==1.2.1
- tokenize-rt ==4.2.1
- toml ==0.10.2
- tomli ==2.0.1
- torch ==1.13.1
- torchaudio ==0.13.1
- torchsummary ==1.5.1
- torchsummaryX ==1.3.0
- torchvision ==0.14.1
- tornado ==6.2
- tox ==3.28.0
- tox-travis ==0.13
- tqdm ==4.66.1
- traitlets ==5.9.0
- transformers ==4.30.2
- transforms3d ==0.4.1
- typed-ast ==1.5.5
- typer ==0.4.2
- typing-inspect ==0.9.0
- typing_extensions ==4.7.1
- untokenize ==0.1.1
- virtualenv ==20.16.2
- wcwidth ==0.1.9
- webencodings ==0.5.1
- websocket-client ==1.6.1
- wemake-python-styleguide ==0.16.1
- widgetsnbextension ==4.0.9
- wrapt ==1.16.0
- Cython ==0.29.16
- Markdown ==3.2.1
- Werkzeug ==1.0.0
- absl-py ==0.9.0
- certifi ==2019.11.28
- chardet ==3.0.4
- cycler ==0.10.0
- grpcio ==1.27.2
- h5py ==2.10.0
- idna ==2.9
- joblib ==0.14.1
- kiwisolver ==1.1.0
- matplotlib ==3.2.1
- numpy ==1.18.2
- protobuf ==3.11.3
- pyparsing ==2.4.6
- python-dateutil ==2.8.1
- requests ==2.23.0
- scikit-learn ==0.22.2.post1
- scipy ==1.4.1
- six ==1.14.0
- sklearn ==0.0
- tensorboard ==1.14.0
- urllib3 ==1.25.8