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GitHub / Waseju / root-tissue-segmentation
Project to automate the segment the root tissue of A. thaliana into 5 different classes, includes automated HPO.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Waseju%2Froot-tissue-segmentation
Stars: 0
Forks: 1
Open Issues: 0
License: mit
Language: Python
Repo Size: 5.65 MB
Dependencies:
125
Created: almost 3 years ago
Updated: over 2 years ago
Last pushed: over 2 years ago
Last synced: about 1 year ago
Files
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Readme
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Dependencies
- Sphinx ==2.4.4
- sphinx_rtd_theme ==0.5.0
environment.yml
pypi
- absl-py ==0.12.0
- adabelief-pytorch ==0.2.1
- aiohttp ==3.7.4.post0
- albumentations ==0.5.2
- alembic ==1.4.1
- async-timeout ==3.0.1
- attrs ==21.2.0
- cachetools ==4.2.2
- chardet ==4.0.0
- click ==8.0.0
- cliff ==3.7.0
- cloudpickle ==1.6.0
- cmaes ==0.8.2
- cmd2 ==1.5.0
- colorama ==0.4.4
- colorlog ==5.0.1
- commonmark ==0.9.1
- cupy ==9.0.0
- cycler ==0.10.0
- databricks-cli ==0.14.3
- decorator ==4.4.2
- docker ==5.0.0
- entrypoints ==0.3
- fastrlock ==0.6
- flask ==2.0.0
- fsspec ==2021.5.0
- future ==0.18.2
- gitdb ==4.0.7
- gitpython ==3.1.17
- google-auth ==1.30.0
- google-auth-oauthlib ==0.4.4
- greenlet ==1.1.0
- grpcio ==1.37.1
- gunicorn ==20.1.0
- idna ==2.10
- imageio ==2.9.0
- imgaug ==0.4.0
- itsdangerous ==2.0.1
- jinja2 ==3.0.1
- joblib ==1.0.1
- json2html ==1.3.0
- kiwisolver ==1.3.1
- mako ==1.1.4
- markdown ==3.3.4
- markupsafe ==2.0.1
- matplotlib ==3.4.2
- mlflow ==1.19.0
- mpi4py ==3.0.3
- multidict ==5.1.0
- networkx ==2.5.1
- ninja ==1.10.0.post2
- nose ==1.3.7
- numpy ==1.20.3
- oauthlib ==3.1.0
- opencv-python ==4.5.2.52
- opencv-python-headless ==4.5.2.52
- optuna ==2.8.0
- packaging ==20.9
- pandas ==1.2.4
- pbr ==5.6.0
- pillow ==8.2.0
- pint ==0.16.1
- plotly ==4.14.3
- portalocker ==2.3.0
- prettytable ==2.1.0
- prometheus-client ==0.10.1
- prometheus-flask-exporter ==0.18.2
- protobuf ==3.17.0
- psutil ==5.8.0
- py-cpuinfo ==7.0.0
- pyasn1 ==0.4.8
- pyasn1-modules ==0.2.8
- pydeprecate ==0.3.0
- pygments ==2.9.0
- pyparsing ==2.4.7
- pyperclip ==1.8.2
- python-dateutil ==2.8.1
- python-editor ==1.0.4
- pytorch-lightning ==1.3.8
- pytorch-toolbelt ==0.4.3
- pytz ==2021.1
- pyudev ==0.22.0
- pywavelets ==1.1.1
- pyyaml ==5.4.1
- querystring-parser ==1.2.4
- requests ==2.25.1
- requests-oauthlib ==1.3.0
- retrying ==1.3.3
- rich ==10.2.1
- rsa ==4.7.2
- ruamel-yaml ==0.16.12
- scikit-image ==0.18.1
- scikit-learn ==0.24.2
- scipy ==1.6.3
- setuptools ==56.2.0
- shapely ==1.7.1
- six ==1.16.0
- sklearn ==0.0
- smmap ==4.0.0
- sqlalchemy ==1.4.15
- sqlparse ==0.4.1
- stevedore ==3.3.0
- system-intelligence ==2.0.2
- tabulate ==0.8.9
- tensorboard ==2.4.1
- tensorboard-data-server ==0.6.1
- tensorboard-plugin-wit ==1.8.0
- tensorboardx ==2.2
- threadpoolctl ==2.1.0
- tifffile ==2021.4.8
- torch ==1.8.0
- torch-encoding ==1.2.1
- torch-optimizer ==0.1.0
- torchmetrics ==0.3.2
- torchvision ==0.9.0
- tqdm ==4.60.0
- typing-extensions ==3.10.0.0
- urllib3 ==1.26.4
- wcwidth ==0.2.5
- websocket-client ==1.0.0
- werkzeug ==2.0.1
- wrapt ==1.12.1
- yarl ==1.6.3