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GitHub / WatsonLab / GoogleMAGs
Workflow for MAG construction
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/WatsonLab%2FGoogleMAGs
Stars: 1
Forks: 2
Open Issues: 0
License: mit
Language: Python
Repo Size: 29.3 KB
Dependencies:
17
Created: over 5 years ago
Updated: over 4 years ago
Last pushed: over 4 years ago
Last synced: about 1 year ago
Files
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Readme
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Dependencies
environment.yaml
conda
- aspera-cli 3.7.7.*
- bcftools 1.9.*
- bwa 0.7.17.*
- cutadapt 1.18.*
- google-api-python-client
- google-cloud-storage
- graphviz 2.38.0.*
- jinja2 2.10.*
- kubectl
- matplotlib 2.2.3.*
- networkx 2.1.*
- pysam 0.15.0.*
- python 3.6.*
- python-kubernetes
- samtools 1.9.*
- snakemake-minimal 5.3.1.*
Dockerfile
docker
- quay.io/snakemake/snakemake latest build