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GitHub / YalamanchiliLab / PolyAMiner-Bulk
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YalamanchiliLab%2FPolyAMiner-Bulk
Stars: 1
Forks: 0
Open Issues: 0
License: None
Language: Python
Repo Size: 133 MB
Dependencies:
141
Created: almost 2 years ago
Updated: 10 months ago
Last pushed: 10 months ago
Last synced: 10 months ago
Files
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Readme
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Dependencies
Dockerfile
docker
- ubuntu latest build
environment.yml
pypi
- absl-py ==1.1.0
- anndata ==0.8.0
- attrs ==22.1.0
- biopython ==1.79
- boto3 ==1.24.28
- botocore ==1.27.28
- bx ==0.3.0
- bx-python ==0.9.0
- cachetools ==5.2.0
- click ==8.1.3
- coloredlogs ==15.0.1
- colormath ==3.0.0
- commonmark ==0.9.1
- contourpy ==1.0.5
- crossmap ==0.6.4
- cython ==0.29.32
- deprecated ==1.2.13
- filelock ==3.7.1
- google-auth ==2.9.0
- google-auth-oauthlib ==0.4.6
- grpcio ==1.47.0
- humanfriendly ==10.0
- importlib-metadata ==4.12.0
- jeepney ==0.8.0
- jinja2 ==3.1.2
- jmespath ==1.0.1
- joblib ==1.1.0
- jsonschema ==4.16.0
- keyring ==23.4.1
- keyrings-alt ==3.1
- llvmlite ==0.39.1
- lzstring ==1.0.4
- markdown ==3.3.7
- matplotlib ==3.6.1
- modin ==0.15.3
- multiqc ==1.13
- natsort ==8.2.0
- networkx ==2.8.7
- nose ==1.3.7
- numba ==0.56.3
- oauthlib ==3.2.0
- pandas ==1.4.4
- patsy ==0.5.2
- protobuf ==3.19.4
- pyahocorasick ==1.4.4
- pyasn1 ==0.4.8
- pyasn1-modules ==0.2.8
- pybedtools ==0.9.0
- pygments ==2.13.0
- pynndescent ==0.5.7
- pyparsing ==3.0.9
- pyrsistent ==0.18.1
- pysam ==0.19.1
- pytz-deprecation-shim ==0.1.0.post0
- regex ==2022.7.9
- requests-oauthlib ==1.3.1
- rich ==12.6.0
- rich-click ==1.5.2
- rpy2 ==3.5.3
- rsa ==4.8
- rseqc ==4.0.1
- s3transfer ==0.6.0
- sacremoses ==0.0.53
- scanpy ==1.9.1
- scikit-learn ==1.1.1
- scipy ==1.8.1
- secretstorage ==3.3.3
- sentencepiece ==0.1.94
- seqeval ==1.2.2
- session-info ==1.0.0
- sklearn ==0.0
- spectra ==0.0.11
- statsmodels ==0.13.2
- stdlib-list ==0.8.0
- synapseclient ==2.7.0
- tensorboard ==2.9.1
- tensorboard-data-server ==0.6.1
- tensorboard-plugin-wit ==1.8.1
- tensorboardx ==2.5.1
- threadpoolctl ==3.1.0
- tokenizers ==0.0.11
- transformers ==2.4.1
- tzdata ==2022.1
- tzlocal ==4.2
- umap-learn ==0.5.3
- uuid ==1.30
- werkzeug ==2.1.2
- wrapt ==1.14.1
- zipp ==3.8.1
- biopython *
- pandas *
- pyahocorasick *
- pybedtools *
- scikit-learn >=0.22.2
- scipy *
- sentencepiece ==0.1.91
- seqeval *
- statsmodels *
- tensorboard *
- tensorboardX *
lib/DNABERT/setup.py
pypi
- accessing *
- boto3 *
- filelock *
- filesystem *
- for *
- numpy *
- progress *
- regex *
- requests *
- sacremoses *
- sentencepiece *
- tokenizers *
- tqdm *
- black *
- boto3 *
- fastapi *
- filelock *
- flake8 *
- isort *
- mecab-python3 *
- numpy *
- pydantic *
- pytest *
- pytest-xdist *
- recommonmark *
- regex *
- requests *
- sacremoses *
- scikit-learn *
- sentencepiece *
- sphinx *
- sphinx-markdown-tables *
- sphinx-rtd-theme *
- starlette *
- tensorflow *
- tensorflow-cpu *
- tokenizers ==0.5.0
- torch *
- tqdm >=4.27
- uvicorn *