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GitHub / aehrc / VariantSpark
machine learning for genomic variants
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aehrc%2FVariantSpark
Stars: 138
Forks: 44
Open Issues: 31
License: other
Language: JavaScript
Repo Size: 74.5 MB
Dependencies:
65
Created: over 7 years ago
Updated: about 2 months ago
Last pushed: about 2 months ago
Last synced: about 2 months ago
Commit Stats
Commits: 508
Authors: 13
Mean commits per author: 39.08
Development Distribution Score: 0.427
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/aehrc/VariantSpark
Topics: association-studies, aws, bioinformatics, databricks, emr, genome, gwas, notebook, random-forest, variant-spark, variantspark, vcf
Files
Dependencies
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-java v1 composite
- actions/setup-python v2 composite
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/create-release v1 composite
- actions/setup-java v1 composite
- actions/setup-python v2 composite
- s4u/maven-settings-action v2.6.0 composite
- au.csiro.aehrc.third.hail-is:hail_2.12_3.1 0.2.74-SNAPSHOT provided
- org.apache.spark:spark-core_2.12 3.1.2 provided
- org.apache.spark:spark-mllib_2.12 3.1.2 provided
- org.ow2.asm:asm 5.1 provided
- org.ow2.asm:asm-analysis 5.1 provided
- org.ow2.asm:asm-util 5.1 provided
- org.scala-lang:scala-library 2.12.14 provided
- args4j:args4j 2.0.29
- com.github.samtools:htsjdk 2.21.0
- com.github.tototoshi:scala-csv_2.12 1.3.8
- it.unimi.dsi:dsiutils 2.3.3
- it.unimi.dsi:fastutil 7.0.8
- joda-time:joda-time 2.7
- org.json4s:json4s-ext_2.12 3.5.3
- org.scala-graph:graph-core_2.12 1.12.3
- au.csiro.aehrc.third.hail-is:hail_2.12_3.1 0.2.74-SNAPSHOT test
- junit:junit 4.13.1 test
- org.apache.commons:commons-csv 1.9.0 test
- org.easymock:easymock 3.5.1 test
- Jinja2 ==3.0.3 development
- Sphinx ==3.3.1 development
- hail ==0.2.74 development
- nbsphinx ==0.8.0 development
- numpy ==1.21.2 development
- pandas ==1.1.4 development
- patsy ==0.5.2 development
- pylint ==2.6.0 development
- pyspark ==3.1.3 development
- pytest ==6.2.2 development
- scipy ==1.6.3 development
- seaborn ==0.11.2 development
- sphinx-rtd-theme ==0.5.0 development
- statsmodels ==0.13.2 development
- twine ==3.2.0 development
- typedecorator ==0.0.5 development
- hail ==0.2.74 development
- nbsphinx * development
- pandas ==1.1.4 development
- typedecorator >=0.0.5 development
- Jinja2 ==3.0.3
- hail ==0.2.74
- numpy ==1.21.2
- pandas ==1.1.4
- patsy ==0.5.2
- pyspark ==3.1.3
- scipy ==1.6.3
- seaborn ==0.11.2
- statsmodels ==0.13.2
- typedecorator ==0.0.5
- typedecorator ==0.0.5