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GitHub / aeisenbarth / spatialdata
An open and universal framework for processing spatial omics data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aeisenbarth%2Fspatialdata
Fork of scverse/spatialdata
Stars: 0
Forks: 0
Open Issues: 0
License: bsd-3-clause
Language: Python
Repo Size: 1.47 MB
Dependencies:
28
Created: 9 months ago
Updated: 2 months ago
Last pushed: 2 months ago
Last synced: 2 months ago
Files
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Readme
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Dependencies
.github/workflows/build.yaml
actions
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/checkout v3 composite
- actions/setup-python v2 composite
- actions/setup-python v4 composite
- codecov/codecov-action v3.1.1 composite
- pypa/gh-action-pypi-publish release/v1 composite
Dockerfile
docker
- condaforge/mambaforge latest build
pyproject.toml
pypi
- anndata >=0.9.1
- dask-image *
- geopandas *
- multiscale_spatial_image >=0.11.2
- networkx *
- numpy *
- ome_zarr >=0.7.0
- pyarrow *
- pygeos *
- rich *
- shapely >=2.0.1
- spatial_image >=0.3.0
- tqdm *
- typing_extensions >=4.0.0,<4.6.0
- xarray *
- xarray-schema *
- xarray-spatial >=0.3.5
- zarr *