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GitHub / bio-ontology-research-group / DeepMOCCA
Graph Neural Network model for survival analysis from multi-omics data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bio-ontology-research-group%2FDeepMOCCA
Stars: 10
Forks: 4
Open Issues: 0
License: gpl-3.0
Language: Jupyter Notebook
Repo Size: 172 MB
Dependencies:
89
Created: almost 4 years ago
Updated: 6 months ago
Last pushed: about 2 years ago
Last synced: 11 days ago
Files
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Readme
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Dependencies
requirements.txt
pypi
- Jinja2 ==2.11.2
- MarkupSafe ==1.1.1
- Pygments ==2.6.1
- QtPy ==1.9.0
- Send2Trash ==1.5.0
- ase ==3.19.1
- attrs ==19.3.0
- backcall ==0.2.0
- bleach ==3.1.5
- certifi ==2020.4.5.2
- chardet ==3.0.4
- click ==7.1.2
- cycler ==0.10.0
- decorator ==4.4.2
- defusedxml ==0.6.0
- entrypoints ==0.3
- feather-format ==0.4.1
- future ==0.18.2
- googledrivedownloader ==0.4
- h5py ==2.10.0
- idna ==2.9
- importlib-metadata ==1.6.1
- ipykernel ==5.3.0
- ipython ==7.15.0
- ipython-genutils ==0.2.0
- ipywidgets ==7.5.1
- isodate ==0.6.0
- jedi ==0.17.1
- joblib ==0.15.1
- jsonschema ==3.2.0
- jupyter ==1.0.0
- jupyter-client ==6.1.3
- jupyter-console ==6.1.0
- jupyter-core ==4.6.3
- kiwisolver ==1.1.0
- llvmlite ==0.33.0
- matplotlib ==3.1.2
- mistune ==0.8.4
- nbconvert ==5.6.1
- nbformat ==5.0.7
- networkx ==2.4
- notebook ==6.0.3
- numba ==0.50.0
- numpy ==1.18.5
- packaging ==20.4
- pandas ==1.0.4
- pandocfilters ==1.4.2
- parso ==0.7.0
- pexpect ==4.8.0
- pickleshare ==0.7.5
- plyfile ==0.7.2
- problog ==2.1.0.39
- prometheus-client ==0.8.0
- prompt-toolkit ==3.0.5
- ptyprocess ==0.6.0
- pyarrow ==0.17.1
- pycox ==0.2.1
- pyparsing ==2.4.7
- pyrsistent ==0.16.0
- python-dateutil ==2.8.1
- pytz ==2020.1
- pyzmq ==19.0.1
- qtconsole ==4.7.4
- rdflib ==5.0.0
- requests ==2.23.0
- scikit-learn ==0.23.1
- scipy ==1.4.1
- six ==1.15.0
- terminado ==0.8.3
- testpath ==0.4.4
- threadpoolctl ==2.1.0
- torch ==1.5.0
- torch-cluster ==1.5.4
- torch-geometric ==1.5.0
- torch-scatter ==2.0.4
- torch-sparse ==0.6.4
- torch-spline-conv ==1.2.0
- torchtuples ==0.2.0
- tornado ==6.0.4
- tqdm ==4.46.1
- traitlets ==4.3.3
- urllib3 ==1.25.9
- wcwidth ==0.2.4
- webencodings ==0.5.1
- widgetsnbextension ==3.5.1
- zipp ==3.1.0
setup.py
pypi
- numpy *
- torch *
- torch-cluster *